Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30119
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)       110   7e-25
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)        72   2e-13
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        69   2e-12
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        69   2e-12
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         69   2e-12
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         69   2e-12
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)        67   9e-12
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)        66   2e-11
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  

>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
          Length = 154

 Score =  110 bits (264), Expect = 7e-25
 Identities = 48/65 (73%), Positives = 53/65 (81%)
 Frame = +2

Query: 2   KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 181
           K+ LC YSGYKIYPGHGK  V+ DGK F FLN +CE A LMRRNPR+VTWTVLYRRK KK
Sbjct: 2   KLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKK 61

Query: 182 GQEEE 196
           G +EE
Sbjct: 62  GTQEE 66


>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
          Length = 139

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +2

Query: 65  KVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 196
           K  GK F +LN +CE A LMRRNPR+VTWTVLYRRK KKG +EE
Sbjct: 38  KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEE 81


>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 113

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/40 (75%), Positives = 33/40 (82%)
 Frame = +2

Query: 77  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 196
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEE 46


>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/40 (75%), Positives = 33/40 (82%)
 Frame = +2

Query: 77  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 196
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEE 46


>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/40 (75%), Positives = 33/40 (82%)
 Frame = +2

Query: 77  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 196
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEE 46


>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/40 (75%), Positives = 33/40 (82%)
 Frame = +2

Query: 77  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 196
           K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEE 46


>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
          Length = 104

 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 29/40 (72%), Positives = 32/40 (80%)
 Frame = +2

Query: 77  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 196
           K F FLN +CE A LMRRNPR+VTWTVLYRR  KKG +EE
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEE 46


>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
          Length = 90

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 29/40 (72%), Positives = 32/40 (80%)
 Frame = +2

Query: 77  KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 196
           K F FLN +CE A LMRRNPR+VTWTVLYR K KKG +EE
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEE 46


>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 122 MRRNPRKVTWTVLYRR 169
           M+RNPRK+ WT  +R+
Sbjct: 1   MKRNPRKMKWTKAFRK 16


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,847,176
Number of Sequences: 59808
Number of extensions: 213842
Number of successful extensions: 468
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)