Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30119
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    81   4e-16
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    47   7e-06
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical p...    30   1.1  
U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine rec...    28   4.4  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 81.0 bits (191), Expect = 4e-16
 Identities = 35/61 (57%), Positives = 42/61 (68%)
 Frame = +2

Query: 2   KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 181
           K+  C YSGYKI+PGHGK +V+ DGK   FL+ K      +RRNPR + WTVLYR K KK
Sbjct: 2   KVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNKK 61

Query: 182 G 184
           G
Sbjct: 62  G 62


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = +2

Query: 2   KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 169
           +I  C +    IYPGHG   V+ D   F F  S+C      ++NPRK+ +T   RR
Sbjct: 2   RIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57


>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
           protein F49E2.5j protein.
          Length = 1100

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 157 PVQAQVQKGPRGRTSKETY*KDPKVPTCDCWCLLSDIMAKRNMKPE 294
           PVQ QV++  + + SK+T   + K PT D      D +  +  KPE
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTADDSMDFLDFVTAKPEKPE 588


>Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical
           protein F49E2.5g protein.
          Length = 528

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 157 PVQAQVQKGPRGRTSKETY*KDPKVPTCDCWCLLSDIMAKRNMKPE 294
           PVQ QV++  + + SK+T   + K PT D      D +  +  KPE
Sbjct: 460 PVQEQVKEQKKSKKSKKTSESESKRPTADDSMDFLDFVTAKPEKPE 505


>Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical
           protein F49E2.5f protein.
          Length = 611

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 157 PVQAQVQKGPRGRTSKETY*KDPKVPTCDCWCLLSDIMAKRNMKPE 294
           PVQ QV++  + + SK+T   + K PT D      D +  +  KPE
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTADDSMDFLDFVTAKPEKPE 588


>U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein136 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
 Frame = -2

Query: 318 LFSLRFTYFRLHITLSHNVTK*APTIARWNFWVLLV--------RFFACSSSWPFLNLRL 163
           +F +    F+    +SH +   +P + R+++W+ L+         F    S+W FL++  
Sbjct: 77  IFDILTFLFQFKQIISHFIHASSPCLGRFSYWITLIDKSGFVIKDFSRRCSTWLFLSIAF 136

Query: 162 YRTVHV 145
            RT+ V
Sbjct: 137 IRTLIV 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,784,347
Number of Sequences: 27780
Number of extensions: 163252
Number of successful extensions: 305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)