Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30118
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.1  

>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 558 KKHCRTEPPGFVVYKNELPSPFSFSNQSRKSVKADISDFVL 436
           +K+ RTEP    ++KN+ PS F  S +  K   +D  D +L
Sbjct: 16  RKNERTEPLPRRIFKNDKPSKFK-SKRKEKDKNSDAYDEML 55


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 269  IDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRVVTVG 394
            +D   Q+  +  + ++ + I    DL P     HNV+++T+G
Sbjct: 1460 VDPSAQLLVFVGRWSHQKGIDLIADLAPKLLTEHNVQLITIG 1501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,735
Number of Sequences: 5004
Number of extensions: 62443
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)