Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30118
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28060| Best HMM Match : Peptidase_U57 (HMM E-Value=1.4)             29   3.3  
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)     29   4.3  
SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)                     28   10.0 
SB_49358| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   10.0 
SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 

>SB_28060| Best HMM Match : Peptidase_U57 (HMM E-Value=1.4)
          Length = 211

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +2

Query: 239 LGYGYTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRVVTVGRYR---ML 409
           LG GY  R+  D++C+     P+ T +++++    L    RR  ++     G  +   + 
Sbjct: 93  LGVGYAVRKCYDQLCEYVRAYPEHTTARFMVAQPKLRGIVRRIQSMNRCVYGDIQANLLE 152

Query: 410 KDMVSHKILKTKSEISALTDF 472
           +D++   +L+ K     ++ F
Sbjct: 153 RDVLPMHLLRAKLAFFGVSKF 173


>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
          Length = 1021

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = +3

Query: 30   KTFVVHHTGLRGSYFVYQHLFINEFAN*ALMAMVTEVKV----NGSEMEANTEVPPALAE 197
            K F++H +  RG + V+Q++ IN      LMA +T  +     N S+ +  +EV   L +
Sbjct: 857  KEFILHASKRRGDFPVFQNVPINTKEGGVLMATITGSEALRIENQSDEDTRSEVMATLRQ 916

Query: 198  KPVGLP-PGKYSLIGWDMD 251
                +P P +     W  D
Sbjct: 917  LYGVIPEPTEMFYARWSKD 935


>SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 392 GRYRMLKDMVSHKILKTKSEIS-ALTDFLDWLEKEKGDGSSFLY 520
           GR + L+D+V+HK  + K E++ AL    D  EK+  + SS  Y
Sbjct: 252 GRVQFLQDLVTHKEAQWKREVAEALEGKPDDSEKDVPEESSLAY 295


>SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)
          Length = 529

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 666 SLAASVGSCATGRGLSVSGQRHRTGNSCL*DCQHLAQGEQQE 791
           S+ A +G C TG+ LS+S     TG+ C      +A+  Q E
Sbjct: 51  SVIADIG-CGTGKYLSISTDAFITGSDCCPKFVEIARERQHE 91


>SB_49358| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 378

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 349 VKVTIRHNILRISLFRSIRCYLTYLIY*SPSCVSISQPIREYF 221
           V  T+ H+   +S+F S+    T L+     C+++ QP+++YF
Sbjct: 99  VTCTVVHSSQMVSIFGSV---YTLLVISVDRCLAVMQPMKKYF 138


>SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 633 GCR*MQGNSEVSLAASVGSCATGRGLSVSGQRHRTGNSC 749
           GC    G S    ++++G+CA G G S + Q    GNSC
Sbjct: 324 GCTNQYGGSGGIASSTIGACAGGGG-SSNCQAGNGGNSC 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,173,476
Number of Sequences: 59808
Number of extensions: 493175
Number of successful extensions: 1241
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)