Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30118
         (793 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr...    31   0.88 
At3g50130.1 68416.m05480 expressed protein ; expression supporte...    31   1.2  
At3g50170.1 68416.m05485 hypothetical protein contains Pfam prof...    30   2.0  
At2g05755.1 68415.m00619 integral membrane family protein contai...    29   2.7  
At2g17960.1 68415.m02082 hypothetical protein                          28   6.2  
At1g68610.1 68414.m07840 hypothetical protein similar to PGPS/D1...    28   6.2  

>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 284

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 17/66 (25%), Positives = 37/66 (56%)
 Frame = +2

Query: 305 KQTYSQYIMPYGDLNPGARRRHNVRVVTVGRYRMLKDMVSHKILKTKSEISALTDFLDWL 484
           ++  +++ +  G++    R +++   +     ++LK++ S ++ K KSE +ALTD    L
Sbjct: 18  REKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTS-EVNKLKSEYTALTDESREL 76

Query: 485 EKEKGD 502
            +EK D
Sbjct: 77  TQEKND 82


>At3g50130.1 68416.m05480 expressed protein ; expression supported
           by MPSS
          Length = 564

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 224 VLSYWLGYGYTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLN 349
           ++ +WLG  Y    L + +CQ  A+ P+ +Y   +    D N
Sbjct: 471 IIEHWLGNDYEVADLFNRLCQEVAFDPQNSYLSQLSNKVDRN 512


>At3g50170.1 68416.m05485 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 541

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 224 VLSYWLGYGYTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRVVTV 391
           ++ +WLG       L + +CQ   + PK ++   +   GD+N    R+ NV   T+
Sbjct: 446 IIEHWLGSDSEVADLFNRLCQEVVFDPKDSHLSRLS--GDVNRYYNRKWNVLKATL 499


>At2g05755.1 68415.m00619 integral membrane family protein contains
           Pfam PF00892: Integral membrane protein domain
          Length = 401

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 27/95 (28%), Positives = 45/95 (47%)
 Frame = +2

Query: 200 ASRSPTRKVLSYWLGYGYTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVR 379
           AS SP  ++    L    T R L     + A+  P+ + S  I+P   LN   R R N+ 
Sbjct: 2   ASSSPETRIADEHLSLELTVRDLESTALESASSAPELS-SDEIIPL--LNQNQRPRINIF 58

Query: 380 VVTVGRYRMLKDMVSHKILKTKSEISALTDFLDWL 484
             +  R +  + ++  K+  T++EIS +T F  W+
Sbjct: 59  SASYTRRKPSEQVI--KV--TETEISPVTQFSSWI 89


>At2g17960.1 68415.m02082 hypothetical protein
          Length = 121

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 401 RMLKDMVSHKILKTKSEISALTDFLDWLEKE 493
           R L+  VSH +L TK + +    ++DW+E +
Sbjct: 84  RKLRSPVSHCMLVTKCQTTLQIGYIDWMESK 114


>At1g68610.1 68414.m07840 hypothetical protein similar to PGPS/D12
           [Petunia x hybrida] GI:4105794; contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 160

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 787 CCSPCARC*QSYRQL 743
           CC PCA C Q YRQL
Sbjct: 107 CCEPCALC-QEYRQL 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,614,074
Number of Sequences: 28952
Number of extensions: 337244
Number of successful extensions: 994
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)