Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30117
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 147 8e-36
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 147 8e-36
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 147 8e-36
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 36 0.041
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 30 2.0
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 30 2.0
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 2.0
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 30 2.0
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 4.7
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 6.2
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 6.2
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 6.2
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 8.1
AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical ... 28 8.1
AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi dom... 28 8.1
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 147 bits (356), Expect = 8e-36
Identities = 67/85 (78%), Positives = 75/85 (88%)
Frame = +1
Query: 253 FTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 432
+TPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF
Sbjct: 323 YTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFT 382
Query: 433 EFPPLGRFAVRDMRQTVAVGVIKAV 507
++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 383 DYAPLGRFAVRDMRQTVAVGVIKSV 407
Score = 138 bits (335), Expect = 3e-33
Identities = 63/84 (75%), Positives = 71/84 (84%)
Frame = +2
Query: 2 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNN 181
KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +
Sbjct: 239 KPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQD 298
Query: 182 PPKGAADFTAQVIVLNHPGQISNG 253
P K A F AQVI++NHPGQISNG
Sbjct: 299 PAKEARTFHAQVIIMNHPGQISNG 322
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 147 bits (356), Expect = 8e-36
Identities = 67/85 (78%), Positives = 75/85 (88%)
Frame = +1
Query: 253 FTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 432
+TPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF
Sbjct: 357 YTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFT 416
Query: 433 EFPPLGRFAVRDMRQTVAVGVIKAV 507
++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 417 DYAPLGRFAVRDMRQTVAVGVIKSV 441
Score = 138 bits (335), Expect = 3e-33
Identities = 63/84 (75%), Positives = 71/84 (84%)
Frame = +2
Query: 2 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNN 181
KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +
Sbjct: 273 KPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQD 332
Query: 182 PPKGAADFTAQVIVLNHPGQISNG 253
P K A F AQVI++NHPGQISNG
Sbjct: 333 PAKEARTFHAQVIIMNHPGQISNG 356
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 147 bits (356), Expect = 8e-36
Identities = 67/85 (78%), Positives = 75/85 (88%)
Frame = +1
Query: 253 FTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 432
+TPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF
Sbjct: 357 YTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFT 416
Query: 433 EFPPLGRFAVRDMRQTVAVGVIKAV 507
++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 417 DYAPLGRFAVRDMRQTVAVGVIKSV 441
Score = 138 bits (335), Expect = 3e-33
Identities = 63/84 (75%), Positives = 71/84 (84%)
Frame = +2
Query: 2 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNN 181
KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +
Sbjct: 273 KPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQD 332
Query: 182 PPKGAADFTAQVIVLNHPGQISNG 253
P K A F AQVI++NHPGQISNG
Sbjct: 333 PAKEARTFHAQVIIMNHPGQISNG 356
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +1
Query: 319 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 495
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 496 IKAV 507
+K V
Sbjct: 528 LKVV 531
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +2
Query: 8 GTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 187
G +V P +V + + V GDN+ F +K + EL+ G++ S ++
Sbjct: 367 GDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLA 425
Query: 188 KGAADFTAQVIVLNHPGQISNG 253
K F A+V+VL H I++G
Sbjct: 426 KTGRVFDAEVLVLEHRSIIASG 447
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +1
Query: 265 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 444
L H+ + C F + +++ G+ + P+ I G +A+V + + +E+F
Sbjct: 508 LYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRA 567
Query: 445 LGRFAVRDMRQTVAVGVIKAV 507
LGR R T+A G+++ V
Sbjct: 568 LGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +1
Query: 265 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 444
L H+ + C F + +++ G+ + P+ I G +A+V + + +E+F
Sbjct: 526 LYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRA 585
Query: 445 LGRFAVRDMRQTVAVGVIKAV 507
LGR R T+A G+++ V
Sbjct: 586 LGRVTFRAGGNTIAAGIVEKV 606
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 35.5 bits (78), Expect = 0.041
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +2
Query: 50 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 229
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 230 HPGQI 244
HP I
Sbjct: 479 HPTTI 483
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 38 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 160
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 38 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 160
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 2 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 127
KPGTI F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 38 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 160
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 50 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 229
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 230 H 232
H
Sbjct: 509 H 509
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 265 LDCHTAHIACKFAEIKEKVDRRTGKSTE 348
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 265 LDCHTAHIACKFAEIKEKVDRRTGKSTE 348
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 265 LDCHTAHIACKFAEIKEKVDRRTGKSTE 348
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -2
Query: 216 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 85
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
>AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical
protein M04G7.1 protein.
Length = 258
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 515 LEVTALMTP-TATVCLMSRTAKRPRGGNSWKDSTHRG 408
+++ AL P T ++CL + K P GN+ D T RG
Sbjct: 172 VDMMALYCPRTCSLCLWAAATKIPNCGNTLPDCTTRG 208
>AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi
domain-containing protein2 protein.
Length = 975
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 602 HTTAILHSPKSVSKEKRATNSFLFYIFYKACNVTLFYNL 718
H TA L S K V+ K+ F+ + ++ C+ LF+ L
Sbjct: 107 HITAELSSKKEVTFTKKGKEDFIVHDRHEKCSAILFHAL 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,681,723
Number of Sequences: 27780
Number of extensions: 385019
Number of successful extensions: 1071
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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