Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30117
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 142 2e-34
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 142 2e-34
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 142 2e-34
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 142 2e-34
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 124 6e-29
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 61 9e-10
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 49 3e-06
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 35 0.066
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 33 0.20
At4g27900.2 68417.m04005 expressed protein 32 0.47
At4g27900.1 68417.m04004 expressed protein 32 0.47
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 5.8
At4g37520.1 68417.m05308 peroxidase 50 (PER50) (P50) (PRXR2) ide... 28 7.6
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 142 bits (345), Expect = 2e-34
Identities = 62/84 (73%), Positives = 76/84 (90%)
Frame = +2
Query: 2 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNN 181
KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++
Sbjct: 261 KPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDD 320
Query: 182 PPKGAADFTAQVIVLNHPGQISNG 253
P KGAA+FT+QVI++NHPGQI NG
Sbjct: 321 PAKGAANFTSQVIIMNHPGQIGNG 344
Score = 130 bits (315), Expect = 7e-31
Identities = 57/88 (64%), Positives = 72/88 (81%)
Frame = +1
Query: 253 FTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 432
+ PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F
Sbjct: 345 YAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFS 404
Query: 433 EFPPLGRFAVRDMRQTVAVGVIKAVTSR 516
E+PPLGRFAVRDMRQTVAVGVIK+V +
Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKSVDKK 432
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 142 bits (345), Expect = 2e-34
Identities = 62/84 (73%), Positives = 76/84 (90%)
Frame = +2
Query: 2 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNN 181
KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++
Sbjct: 261 KPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDD 320
Query: 182 PPKGAADFTAQVIVLNHPGQISNG 253
P KGAA+FT+QVI++NHPGQI NG
Sbjct: 321 PAKGAANFTSQVIIMNHPGQIGNG 344
Score = 130 bits (315), Expect = 7e-31
Identities = 57/88 (64%), Positives = 72/88 (81%)
Frame = +1
Query: 253 FTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 432
+ PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F
Sbjct: 345 YAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFS 404
Query: 433 EFPPLGRFAVRDMRQTVAVGVIKAVTSR 516
E+PPLGRFAVRDMRQTVAVGVIK+V +
Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKSVDKK 432
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 142 bits (345), Expect = 2e-34
Identities = 62/84 (73%), Positives = 76/84 (90%)
Frame = +2
Query: 2 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNN 181
KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++
Sbjct: 261 KPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDD 320
Query: 182 PPKGAADFTAQVIVLNHPGQISNG 253
P KGAA+FT+QVI++NHPGQI NG
Sbjct: 321 PAKGAANFTSQVIIMNHPGQIGNG 344
Score = 130 bits (315), Expect = 7e-31
Identities = 57/88 (64%), Positives = 72/88 (81%)
Frame = +1
Query: 253 FTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 432
+ PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F
Sbjct: 345 YAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFS 404
Query: 433 EFPPLGRFAVRDMRQTVAVGVIKAVTSR 516
E+PPLGRFAVRDMRQTVAVGVIK+V +
Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKSVDKK 432
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 142 bits (345), Expect = 2e-34
Identities = 62/84 (73%), Positives = 76/84 (90%)
Frame = +2
Query: 2 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNN 181
KPG +V FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++
Sbjct: 261 KPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDD 320
Query: 182 PPKGAADFTAQVIVLNHPGQISNG 253
P KGAA+FT+QVI++NHPGQI NG
Sbjct: 321 PAKGAANFTSQVIIMNHPGQIGNG 344
Score = 130 bits (315), Expect = 7e-31
Identities = 57/88 (64%), Positives = 72/88 (81%)
Frame = +1
Query: 253 FTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 432
+ PVLDCHT+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F
Sbjct: 345 YAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFS 404
Query: 433 EFPPLGRFAVRDMRQTVAVGVIKAVTSR 516
E+PPLGRFAVRDMRQTVAVGVIK+V +
Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKSVDKK 432
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 124 bits (299), Expect = 6e-29
Identities = 53/88 (60%), Positives = 70/88 (79%)
Frame = +1
Query: 253 FTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 432
+TPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P+KP+ VE++
Sbjct: 11 YTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYS 70
Query: 433 EFPPLGRFAVRDMRQTVAVGVIKAVTSR 516
+PPLGRFA+RDMRQTV VGVIK+V +
Sbjct: 71 AYPPLGRFAIRDMRQTVGVGVIKSVVKK 98
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 60.9 bits (141), Expect = 9e-10
Identities = 26/87 (29%), Positives = 47/87 (54%)
Frame = +1
Query: 253 FTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQ 432
+ +L H C+ E+K ++D +T K + +K+G A + + + +C+E F
Sbjct: 441 YKAILHIHAVVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFS 500
Query: 433 EFPPLGRFAVRDMRQTVAVGVIKAVTS 513
+FP LGRF +R +T+AVG + + S
Sbjct: 501 DFPQLGRFTLRTEGKTIAVGKVTELLS 527
Score = 31.9 bits (69), Expect = 0.47
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = +2
Query: 2 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNN 181
+ G +V P +V ++ + ++ A PG+N+ + + +++ G+V S N
Sbjct: 356 REGDSLVVMPNKEQVKVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFVL-SSIVN 414
Query: 182 PPKGAADFTAQVIVL 226
P +F AQ+ +L
Sbjct: 415 PVPAVTEFVAQLQIL 429
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/78 (29%), Positives = 44/78 (56%)
Frame = +1
Query: 274 HTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 453
H A A ++ +D +TG+ T+ +P+ + + +A++ + P+CVE+F E LGR
Sbjct: 586 HHAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGR 645
Query: 454 FAVRDMRQTVAVGVIKAV 507
+R +TVA+G + +
Sbjct: 646 VFLRSSGRTVAMGKVTRI 663
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = +2
Query: 2 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNN 181
+PG+ V+ P+ ++S+E +A A GDNV ++ + ++ G V +
Sbjct: 496 RPGSKVMVMPSGDQGTIRSLERDSQACTIARAGDNVALALQGIDANQVMAGDVL-CHPDF 554
Query: 182 PPKGAADFTAQVIVLNHPGQISNGS 256
P A V+VL I GS
Sbjct: 555 PVSVATHLELMVLVLEGATPILLGS 579
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 50 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 160
V VEM + L EA+ GDNVG ++ + +++RG V
Sbjct: 333 VTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMV 369
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 33.1 bits (72), Expect = 0.20
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Frame = +2
Query: 38 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 217
+ + V VEM + L GDNVG ++ + ++++RG V +K K F A++
Sbjct: 312 LKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEI 369
Query: 218 IVL------NHPGQISNGSHQYWIAT 277
VL H SN Q+++ T
Sbjct: 370 YVLTKDEGGRHTAFFSNYRPQFYLRT 395
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 355 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 447
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 355 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 447
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 295 KFAEIKEKVDRRTGKSTEVNPKSI 366
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At4g37520.1 68417.m05308 peroxidase 50 (PER50) (P50) (PRXR2)
identical to SP|Q43731 Peroxidase 50 precursor (EC
1.11.1.7) (Atperox P50) (PRXR2) (ATP9a)] {Arabidopsis
thaliana}
Length = 329
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 201 ILQLKSLCLTILVKSQTVHTSIGLPHCPHCLQICRN 308
+L L SLCLT+ + S + + CP+ QI RN
Sbjct: 10 LLLLLSLCLTLDLSSAQLRRNFYAGSCPNVEQIVRN 45
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,649,682
Number of Sequences: 28952
Number of extensions: 352537
Number of successful extensions: 1017
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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