Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30116
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 52 3e-08
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 44 8e-06
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 44 8e-06
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 44 8e-06
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 44 8e-06
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 44 8e-06
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 31 0.11
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 26 2.3
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 4.0
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 5.3
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 7.0
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 24 9.3
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 52.4 bits (120), Expect = 3e-08
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
++GKQM D+K A+ Y ++GGSVLHLVLALRGG
Sbjct: 45 YAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
Score = 33.5 bits (73), Expect = 0.015
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
MLIKVKTLTG GIPP QQRLI+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIY 45
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 44.4 bits (100), Expect = 8e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 29.1 bits (62), Expect = 0.33
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 44.4 bits (100), Expect = 8e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 29.1 bits (62), Expect = 0.33
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 44.4 bits (100), Expect = 8e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 29.1 bits (62), Expect = 0.33
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 44.4 bits (100), Expect = 8e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 44.4 bits (100), Expect = 8e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 44.4 bits (100), Expect = 8e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 44.4 bits (100), Expect = 8e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 273 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 44.4 bits (100), Expect = 8e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 29.1 bits (62), Expect = 0.33
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
Score = 29.1 bits (62), Expect = 0.33
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 121
Score = 29.1 bits (62), Expect = 0.33
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 197
Score = 29.1 bits (62), Expect = 0.33
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 273
Score = 29.1 bits (62), Expect = 0.33
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 349
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 44.4 bits (100), Expect = 8e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 29.1 bits (62), Expect = 0.33
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 30.7 bits (66), Expect = 0.11
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLAL 341
++G+ + DE++ + YK+Q G +HLV L
Sbjct: 48 YAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.2 bits (55), Expect = 2.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 183 RQSGKNQRKSRRKGRHSAAATASHFSGKQMNDEKTAQD 296
+QSGK ++K R+K R S + S SG +DE D
Sbjct: 937 KQSGKKKKKDRKK-RKSKSKQESSDSGVSEDDEIPLSD 973
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 4.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 345 PLKPKQDEVLNLPELCNLELSSHHSFVFLKNETLL 241
PL+ K LN+P + LE+ +S + L ++ +L
Sbjct: 1028 PLQFKPVRALNIPNISQLEVIEEYSLLLLLSDKVL 1062
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 5.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 299 QSSGRFSTSSCFGFKGRRMIWLVIIFLCIYKIKFYFSLHI 418
QS G F T G ++ +++ LCIY FY S+ +
Sbjct: 367 QSQGHF-TEVLNGIGTILLVLVILTLLCIYTAAFYRSVRL 405
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 24.6 bits (51), Expect = 7.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 259 QENK*MMRRQLKITKFREVQYFILFWL 339
+EN + ++K+TK + + +LFWL
Sbjct: 35 EENDSVDNEEIKLTKEKHEKLLLLFWL 61
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 384 IQRKIITSQIIRLPLKPKQDEVLNLPELCNLEL 286
+ R++ TS I+ PKQ +N+ E +LEL
Sbjct: 92 VPRELQTSPIVSPTTSPKQTPSINVTEPQDLEL 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,456,261
Number of Sequences: 5004
Number of extensions: 23823
Number of successful extensions: 83
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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