Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30116
(447 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-05
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-05
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 44 4e-05
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 44 4e-05
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 44 4e-05
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 33 0.14
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 29 1.8
SB_52254| Best HMM Match : ANF_receptor (HMM E-Value=7.84727e-44) 27 7.1
SB_24366| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_57365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_18157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 273 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 425 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 501 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 197
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 273
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 349
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 425
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 501
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 273 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 197
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 273
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 349
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVL 335
+ +++ D ++ DY ++ GS+LHL L
Sbjct: 120 YEEEELVDNRSLADYNIKQGSILHLFL 146
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
F+GKQ+ D +T DY +Q S LHLVL LRGG
Sbjct: 11 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 42
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 32.7 bits (71), Expect = 0.14
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGGE 353
F+G+ ++DE T + + G+ LHL++ L GGE
Sbjct: 116 FNGQVLSDEDTFEKVGIFAGATLHLIVRLLGGE 148
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +1
Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
M I VKTLTG GIPP QQRLIF
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 123
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 255 FSGKQMNDEKTAQDYKVQ 308
F+GKQ+ D +T DY +Q
Sbjct: 123 FAGKQLEDGRTLSDYNIQ 140
>SB_52254| Best HMM Match : ANF_receptor (HMM E-Value=7.84727e-44)
Length = 933
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 177 THRQSGKNQRKS-RRKGRHSAAATASHFSGKQM 272
TH+Q G Q + RK RH+ A + FSG M
Sbjct: 88 THKQRGCKQTQCCGRKSRHTVAIVGAAFSGVTM 120
>SB_24366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = -1
Query: 375 KIITSQIIRLPLKPKQDEVLNLPELCNLELSSHHSFVFLKNETLLLRRN 229
+II S I LP KP+Q+ L+LP L LS + + + L+ + + L+++
Sbjct: 38 RIIGSLIGSLPRKPRQNVFLSLP----LVLSENETTLLLEKKVVELKQS 82
>SB_57365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 379 KENYHKPDHSPPLKAKTR 326
KE +H PD +PP K TR
Sbjct: 61 KEEHHTPDFNPPPKPATR 78
>SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 261 GKQMNDEKTAQDYKVQGGSVLHLVLALRGGE 353
G +ND+ + + ++ +VL LVL ++GGE
Sbjct: 276 GPDINDDGSHERESLRANAVLPLVLRMKGGE 306
>SB_18157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = -1
Query: 384 IQRKIITSQIIRLPLKPKQDEVLNLPELCNLELSSHHSFVFLKNETL 244
I ++++ Q R PLK K D +LP L + LSS+ S ++ ++ +L
Sbjct: 26 ISQEVVGLQEERKPLKAKMDTYQSLP-LISQWLSSNKSLLYFQDISL 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,980,720
Number of Sequences: 59808
Number of extensions: 150421
Number of successful extensions: 507
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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