Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30116
         (447 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.     44   2e-06

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score = 44.4 bits (100), Expect = 2e-06
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +3

Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
           F+GKQ+ D +T  DY +Q  S LHLVL LRGG
Sbjct: 45  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76



 Score = 44.4 bits (100), Expect = 2e-06
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +3

Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
           F+GKQ+ D +T  DY +Q  S LHLVL LRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score = 44.4 bits (100), Expect = 2e-06
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +3

Query: 255 FSGKQMNDEKTAQDYKVQGGSVLHLVLALRGG 350
           F+GKQ+ D +T  DY +Q  S LHLVL LRGG
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score = 29.1 bits (62), Expect = 0.075
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = +1

Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
           M I VKTLTG                        GIPP QQRLIF
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45



 Score = 29.1 bits (62), Expect = 0.075
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = +1

Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
           M I VKTLTG                        GIPP QQRLIF
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121



 Score = 29.1 bits (62), Expect = 0.075
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = +1

Query: 124 MLIKVKTLTGXXXXXXXXXXXXXXXXXXXXXXXXGIPPQQQRLIF 258
           M I VKTLTG                        GIPP QQRLIF
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 197


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 351,399
Number of Sequences: 2352
Number of extensions: 5033
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 37843779
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)