Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30112
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.8  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   7.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.5  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   9.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   9.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.5  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 69  RTLNFLNQHSSFY 107
           RTLN LN H S Y
Sbjct: 412 RTLNSLNNHKSIY 424


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 162 QLEAPCSFNFCSLRAIRRY 106
           + +   SF  C L+A+R Y
Sbjct: 131 ECDVALSFKLCMLKAMRNY 149


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +1

Query: 232 LPCSVSAHGNSGRKHSRCCTSILRKFSGRQH 324
           L  ++   GN  +K++    S+  +  G QH
Sbjct: 196 LVVNIEKSGNESKKYATSSNSLRNRTHGFQH 226


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +1

Query: 232 LPCSVSAHGNSGRKHSRCCTSILRKFSGRQH 324
           L  ++   GN  +K++    S+  +  G QH
Sbjct: 201 LVVNIEKSGNESKKYATSSNSLRNRTHGFQH 231


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +1

Query: 232 LPCSVSAHGNSGRKHSRCCTSILRKFSGRQH 324
           L  ++   GN  +K++    S+  +  G QH
Sbjct: 196 LVVNIEKSGNESKKYATSSNSLRNRTHGFQH 226


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +1

Query: 232 LPCSVSAHGNSGRKHSRCCTSILRKFSGRQH 324
           L  ++   GN  +K++    S+  +  G QH
Sbjct: 196 LVVNIEKSGNESKKYATSSNSLRNRTHGFQH 226


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 397 RERVMFSITSWRGGYHG 347
           RE + F  T W   Y+G
Sbjct: 424 REAITFQYTDWEEVYNG 440


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 397 RERVMFSITSWRGGYHG 347
           RE + F  T W   Y+G
Sbjct: 424 REAITFQYTDWEEVYNG 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,069
Number of Sequences: 438
Number of extensions: 2426
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)