Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30110X
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    25   8.7  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   8.7  
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    25   8.7  

>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 197 EPETLIDVSDAASGATRPAPAQP 265
           EP+  ++V +A  G  +P+ AQP
Sbjct: 201 EPDFALEVCEAVKGMWKPSAAQP 223


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -2

Query: 252 AGRVAPLAASD--TSISVSGSQPAEHTTCPN 166
           + R A  AA++  +S S++G++PA  T+ PN
Sbjct: 153 SSRAAQSAAAELISSSSITGARPANSTSVPN 183


>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = +2

Query: 146 TDQQIERLGHVVCSAGWEPETLIDVSDAASGATRPAPAQPCGAPRSGT 289
           T      LG VV     EPET + V D          A    +P SGT
Sbjct: 66  TSYAANALGEVVFVELPEPETTVSVGDGIGAVESVKSASDVYSPVSGT 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,973
Number of Sequences: 5004
Number of extensions: 22588
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)