Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30110X
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0964 - 24860373-24860381,24860427-24860768,24861436-248615...    30   1.6  
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           29   2.9  
02_04_0094 + 19664434-19665078                                         29   2.9  
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965           29   2.9  
08_01_0862 - 8435171-8435551                                           29   3.8  
01_06_1398 - 37027659-37028112,37028393-37028460,37028543-37028908     28   5.0  
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325...    28   6.7  

>12_02_0964 -
           24860373-24860381,24860427-24860768,24861436-24861583,
           24862070-24862089
          Length = 172

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 27  VRRRWCVWARGCACRAWPP 83
           VRRRW  W+ G A   WPP
Sbjct: 139 VRRRWEAWSGGDASPRWPP 157


>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 78  PPTRGPCAATPPGRSAXSWTTALRTSR 158
           P  R P A+ PP  +   WT +L T R
Sbjct: 620 PRPRAPSASAPPAAAPREWTVSLTTGR 646


>02_04_0094 + 19664434-19665078
          Length = 214

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = +3

Query: 3   CTQRRAAGVRRRWCV-WARGCAC-RAW--PPTR 89
           C    AAG RR WC  W    AC R W  PP R
Sbjct: 181 CPAAAAAGRRRWWCAPWLVSAACRRCWSAPPPR 213


>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
          Length = 675

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 215 DVSDAASGATRPAPAQPCGAPRSGT 289
           D + A +  TRPA A P G P SG+
Sbjct: 213 DTAFAGNNVTRPASASPAGTPPSGS 237


>08_01_0862 - 8435171-8435551
          Length = 126

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 294 LPVPDRGAPQGCAGAGRVAPLAASDTSISVSGSQPAEHTTCPNR 163
           LP  D  AP   AG G  A  A  +   + +GS  A  T+C  R
Sbjct: 27  LPCADVEAPVAAAGGGGAAAAAGVEEEEAAAGSGAALPTSCGRR 70


>01_06_1398 - 37027659-37028112,37028393-37028460,37028543-37028908
          Length = 295

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 239 ATRPAPAQPCGAPRSG 286
           +TRPAP  PC  PR+G
Sbjct: 27  STRPAPPPPCPCPRAG 42


>06_01_0456 -
           3249662-3249710,3249838-3250451,3250694-3250780,
           3251509-3252384,3252445-3252534,3252645-3252696,
           3253117-3253168,3253265-3253363,3253444-3253528,
           3253620-3253668,3253749-3253816,3254417-3254482,
           3255690-3255741,3256685-3256767,3256915-3256946,
           3257271-3257466,3258542-3258607,3259797-3259869,
           3260010-3260224
          Length = 967

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 145 SAVVQEXAERPGGVAAQGPRVGGHALHAQPR 53
           S   Q    +PGG +A  P++ GH   AQ R
Sbjct: 819 STAPQVLPSQPGGTSAVNPQIRGHLFPAQQR 849


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,048,214
Number of Sequences: 37544
Number of extensions: 184193
Number of successful extensions: 831
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)