Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30110X
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   29   2.9  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         27   9.0  

>SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 3    CTQRRAAGVRRRWCVWARGCACRAWPPTRGPCAATP 110
            C+QR    V    C  ARG AC+ W   R  C   P
Sbjct: 938  CSQRSIDDVTE--CTDARGAACKDWADNRNDCLRFP 971


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +3

Query: 15  RAAGVRRRWCVWARGCAC----RAWPPTRGPCAATPPGRSAXSWTTA 143
           RA G RR W   ARG       RA    R PCA  P  R+A +W  A
Sbjct: 283 RATGPRRGWSQGARGLGLLGHGRADIEPR-PCACAPRHRAATTWFRA 328


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 512  SVNS**SNYLETVDSLPLLKNS*SMERSTINLSLV 408
            S+NS  +N+   +D +PLL    S+  +T+NL +V
Sbjct: 2408 SINS--TNFQRALDFIPLLAKQFSISNNTVNLGVV 2440


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,419,147
Number of Sequences: 59808
Number of extensions: 192748
Number of successful extensions: 579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)