Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30109
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   115   7e-27
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    31   0.25 
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    31   0.25 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   1.0  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   3.1  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   5.4  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        26   7.2  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   9.5  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   9.5  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  115 bits (277), Expect = 7e-27
 Identities = 49/85 (57%), Positives = 65/85 (76%)
 Frame = +1

Query: 1   MTMAQAESCKFNPFDLTKIWPHAEYPLIPVGKLVLDRNPKNYFAEVEQIAFSPSNLVPGI 180
           MT  +AE  ++N FDLTK+WPH + P+  VG+  L++NP N+FA++EQ  FSPS++VPGI
Sbjct: 270 MTPQEAEKYRYNIFDLTKVWPHKDVPMQRVGRFTLNQNPTNFFADIEQAGFSPSHMVPGI 329

Query: 181 EPSPDKMLQGRLFAYSDTHRHRLGA 255
           E S D +LQ R F+Y DTHRHRLGA
Sbjct: 330 EVSADPVLQVRTFSYPDTHRHRLGA 354



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 NYLQIPVNCPYKVAVSNYQRDGPQAIH-NQDDCPNYFPNSFSGPQECPRAQRLQPRYNVG 431
           N+ QIPVN P K  V NY RDGP  ++ NQ + PNY P+S   P    + +  +      
Sbjct: 355 NFEQIPVNSP-KCPVFNYSRDGPMNVNGNQGNWPNY-PSSIR-PLAKVQYEPDEGHEKWV 411

Query: 432 GDVDRYDSGQTEDNFSQATALYKQVL 509
           G V  +    T+ +F Q  A ++ VL
Sbjct: 412 GQVTYHMDEITDVDFEQPRAFWQNVL 437



 Score = 29.9 bits (64), Expect = 0.44
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 533 IANIVDHLKDAAAFIQERAIKIFSQVHPELGNKV 634
           + N+  HL  A + ++ER   +F++V  ELG ++
Sbjct: 448 VKNVAGHLSGAISPVRERQYGVFTRVDSELGRRI 481


>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 22/88 (25%), Positives = 38/88 (43%)
 Frame = -3

Query: 682 PLQICMIFFVRS*TSCYFISKFRMYLREDLDSSFLNKRSSILEVIYYIGNSSLFSCIIKT 503
           P+ + MI    S T     + +   L  D+ +     R +   ++Y IG  S F  ++K+
Sbjct: 101 PIYLSMII-AWSITEIIRYAFYAFNLNGDIPAFLTWLRYNTFLILYPIGAGSEFLLVLKS 159

Query: 502 CLYSAVAWEKLSSVWPLSYRSTSPPTLY 419
            + +   W     +WP+   S  PP LY
Sbjct: 160 RIAAQYVWSLNKLLWPI-LMSIYPPGLY 186


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = -2

Query: 503 LFIQCCRLGEVVLSLATIIPVYISADIVSRLQTLSTWTFLWSRKRVGEIVRAVVLIVNSL 324
           +F+   ++G +  +L T +   +   IV  LQ +  W + W ++R G + R     + SL
Sbjct: 339 VFVDNYKMGYMGANL-TYLNFLVGVTIVVMLQPIQNWLYRWDKRRHGGVARPEARFLISL 397

Query: 323 RSI 315
            ++
Sbjct: 398 LTV 400


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -2

Query: 344  VLIVNSLRSITLVVGNSNFVWTIYRNL 264
            V+  NSLR++++VVG+S+  W I  NL
Sbjct: 2013 VMFANSLRTLSIVVGHSDSAW-IEENL 2038


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +2

Query: 461  D*GQLLPSDSTV*TSFDDAAKQRAIANIVDHLKDAAAFIQERAIKIFSQVHPELGNKVAA 640
            D  + +P +       +D A + A+ ++VD   DA+AF+    I ++ +  P   + +AA
Sbjct: 866  DLAESVPEEEVDGWEVEDLAPEEAVNDVVD---DASAFVGADEIFLWKRNSPLAADHIAA 922

Query: 641  G 643
            G
Sbjct: 923  G 923


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 619 FRMYLREDLDSSFLNKRSSILEVIYYIGNSSLFSCI-IKTC 500
           FR YLR+  +  F+      + +  Y+GNS +F  +  K C
Sbjct: 226 FRTYLRQKPEELFIFTTKFSIVLCAYMGNSQIFPLVSSKNC 266


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -2

Query: 395 WTFLWSRKRVGEIVRAVVLIVNSLRSITLVVGNSNFVWTIYRNLEVVAPSLW 240
           W  LW   +  EI R + ++     +  +V  N+NF      NL+V++   W
Sbjct: 340 WKRLWQNAKADEIDRLLEVVKQIEEAGAIVYNNTNFY-----NLDVISNDGW 386


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 524 QRAIANIVDHLKDAAAFIQERAIK 595
           +R +  I+DHL  +   IQE+A+K
Sbjct: 338 KRILEIIIDHLGSSVPLIQEKALK 361


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
 Frame = -3

Query: 607 LREDLDSS-----FLNKRSSILEVIYYIGNSSLFSC 515
           +R D DS      F NK+ S L+V+  + N   F+C
Sbjct: 127 MRNDFDSKGYVCPFCNKKFSSLDVLSLVTNEGTFAC 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,580
Number of Sequences: 5004
Number of extensions: 72972
Number of successful extensions: 222
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)