Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30109
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c...   100   1e-21
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c...   100   1e-21
At1g20630.1 68414.m02581 catalase 1 identical to catalase 1 GI:2...   100   2e-21
At4g35090.1 68417.m04984 catalase 2 identical to catalase 2 SP:P...    99   3e-21
At3g12440.1 68416.m01549 extensin family protein contains simila...    30   1.6  
At5g54250.2 68418.m06758 cyclic nucleotide-regulated ion channel...    29   4.7  
At5g54250.1 68418.m06757 cyclic nucleotide-regulated ion channel...    29   4.7  
At5g61390.1 68418.m07702 exonuclease family protein contains exo...    28   6.3  
At1g23900.2 68414.m03016 gamma-adaptin, putative similar to SP|O...    28   6.3  
At1g23900.1 68414.m03015 gamma-adaptin, putative similar to SP|O...    28   6.3  
At1g19440.1 68414.m02422 very-long-chain fatty acid condensing e...    28   8.3  

>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 427

 Score =  100 bits (239), Expect = 1e-21
 Identities = 47/84 (55%), Positives = 58/84 (69%)
 Frame = +1

Query: 1   MTMAQAESCKFNPFDLTKIWPHAEYPLIPVGKLVLDRNPKNYFAEVEQIAFSPSNLVPGI 180
           M  A  +   F+P D+TKIWP    PL PVG+LVL+R   N+F E EQ+AF+P  +VPGI
Sbjct: 274 MDPADEDKFDFDPLDVTKIWPEDILPLQPVGRLVLNRTIDNFFNETEQLAFNPGLVVPGI 333

Query: 181 EPSPDKMLQGRLFAYSDTHRHRLG 252
             S DK+LQ R+FAY DT RHRLG
Sbjct: 334 YYSDDKLLQCRIFAYGDTQRHRLG 357



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +3

Query: 255 NYLQIPVNCPYKVAVSNYQRDGPQAIHNQDDCPNYFPNSFSGPQEC 392
           NYLQ+PVN P K A  N   +G     ++D+  NY+P+ F  P  C
Sbjct: 359 NYLQLPVNAP-KCAHHNNHHEGFMNFMHRDEEINYYPSKFD-PVRC 402


>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 492

 Score =  100 bits (239), Expect = 1e-21
 Identities = 47/84 (55%), Positives = 58/84 (69%)
 Frame = +1

Query: 1   MTMAQAESCKFNPFDLTKIWPHAEYPLIPVGKLVLDRNPKNYFAEVEQIAFSPSNLVPGI 180
           M  A  +   F+P D+TKIWP    PL PVG+LVL+R   N+F E EQ+AF+P  +VPGI
Sbjct: 274 MDPADEDKFDFDPLDVTKIWPEDILPLQPVGRLVLNRTIDNFFNETEQLAFNPGLVVPGI 333

Query: 181 EPSPDKMLQGRLFAYSDTHRHRLG 252
             S DK+LQ R+FAY DT RHRLG
Sbjct: 334 YYSDDKLLQCRIFAYGDTQRHRLG 357



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 27/82 (32%), Positives = 41/82 (50%)
 Frame = +3

Query: 255 NYLQIPVNCPYKVAVSNYQRDGPQAIHNQDDCPNYFPNSFSGPQECPRAQRLQPRYNVGG 434
           NYLQ+PVN P K A  N   +G     ++D+  NY+P+ F  P  C  A+++    N   
Sbjct: 359 NYLQLPVNAP-KCAHHNNHHEGFMNFMHRDEEINYYPSKFD-PVRC--AEKVPTPTNSYT 414

Query: 435 DVDRYDSGQTEDNFSQATALYK 500
            +      + E+NF QA   Y+
Sbjct: 415 GIRTKCVIKKENNFKQAGDRYR 436


>At1g20630.1 68414.m02581 catalase 1 identical to catalase 1
           GI:2511725 from [Arabidopsis thaliana]
          Length = 492

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 46/84 (54%), Positives = 60/84 (71%)
 Frame = +1

Query: 1   MTMAQAESCKFNPFDLTKIWPHAEYPLIPVGKLVLDRNPKNYFAEVEQIAFSPSNLVPGI 180
           M  A  +   F+P D+TKIWP    PL PVG+LVL++N  N+F E EQIAF P+ +VPGI
Sbjct: 274 MDPAHEDKFDFDPLDVTKIWPEDILPLQPVGRLVLNKNIDNFFNENEQIAFCPALVVPGI 333

Query: 181 EPSPDKMLQGRLFAYSDTHRHRLG 252
             S DK+LQ R+F+Y+D+ RHRLG
Sbjct: 334 HYSDDKLLQTRIFSYADSQRHRLG 357



 Score = 36.3 bits (80), Expect = 0.024
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = +3

Query: 255 NYLQIPVNCPYKVAVSNYQRDGPQAIHNQDDCPNYFPN 368
           NYLQ+PVN P K A  N   DG     ++D+  NYFP+
Sbjct: 359 NYLQLPVNAP-KCAHHNNHHDGFMNFMHRDEEVNYFPS 395


>At4g35090.1 68417.m04984 catalase 2 identical to catalase 2
           SP:P25819, GI:17865693 from [Arabidopsis thaliana]
          Length = 492

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 44/81 (54%), Positives = 59/81 (72%)
 Frame = +1

Query: 10  AQAESCKFNPFDLTKIWPHAEYPLIPVGKLVLDRNPKNYFAEVEQIAFSPSNLVPGIEPS 189
           A  +   F+P D+TK WP    PL PVG++VL++N  N+FAE EQ+AF P+ +VPGI  S
Sbjct: 277 ADEDKFDFDPLDVTKTWPEDILPLQPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGIHYS 336

Query: 190 PDKMLQGRLFAYSDTHRHRLG 252
            DK+LQ R+F+Y+DT RHRLG
Sbjct: 337 DDKLLQTRVFSYADTQRHRLG 357



 Score = 35.5 bits (78), Expect = 0.041
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 255 NYLQIPVNCPYKVAVSNYQRDGPQAIHNQDDCPNYFPNSF 374
           NYLQ+PVN P K A  N   +G     ++D+  NYFP+ +
Sbjct: 359 NYLQLPVNAP-KCAHHNNHHEGFMNFMHRDEEVNYFPSRY 397


>At3g12440.1 68416.m01549 extensin family protein contains
           similarity to Swiss-Prot:Q38913 extensin 1 precursor
           (AtExt1) (AtExt4) [Arabidopsis thaliana]
          Length = 353

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -3

Query: 457 PLSYRSTSPPTLYRGCKR*ARGHSCGP 377
           P  YRS SPP LYR     AR  S  P
Sbjct: 128 PAQYRSVSPPALYRSVSPPARYRSVSP 154


>At5g54250.2 68418.m06758 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC4) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc4) GI:4581203 from [Arabidopsis thaliana]
          Length = 694

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 413 LQTLSTWTFLWSRKRVGEIVRAVVLIVNSLRSITLVVGN 297
           L TLST+  L S     E+V  ++++ + L  +T+++GN
Sbjct: 374 LMTLSTFGNLESTTEWSEVVFNIIVLTSGLLLVTMLIGN 412


>At5g54250.1 68418.m06757 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC4) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc4) GI:4581203 from [Arabidopsis thaliana]
          Length = 694

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 413 LQTLSTWTFLWSRKRVGEIVRAVVLIVNSLRSITLVVGN 297
           L TLST+  L S     E+V  ++++ + L  +T+++GN
Sbjct: 374 LMTLSTFGNLESTTEWSEVVFNIIVLTSGLLLVTMLIGN 412


>At5g61390.1 68418.m07702 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 487

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 390 CPRAQRLQPRYNVGGDVDRYDSGQTEDNFSQATALYKQV 506
           CP A R+     + GD+DRY +   +  FS ATA  K +
Sbjct: 404 CPTA-RIHIPTELNGDIDRYAAEIHQKEFSGATATQKLI 441


>At1g23900.2 68414.m03016 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 503 SFDDAAKQRAIANIVDHLKDAAAFIQERAIKI 598
           +FDD A QR    I++ +KD  A I++RA+++
Sbjct: 341 TFDDQAVQRHRVTILECVKDPDASIRKRALEL 372


>At1g23900.1 68414.m03015 gamma-adaptin, putative similar to
           SP|O43747 Adapter-related protein complex 1 gamma 1
           subunit (Gamma-adaptin) (Clathrin assembly protein
           complex 1 gamma-1 large chain) {Homo sapiens}; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 876

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 503 SFDDAAKQRAIANIVDHLKDAAAFIQERAIKI 598
           +FDD A QR    I++ +KD  A I++RA+++
Sbjct: 341 TFDDQAVQRHRVTILECVKDPDASIRKRALEL 372


>At1g19440.1 68414.m02422 very-long-chain fatty acid condensing
           enzyme, putative similar to GB:AAD37122 from
           [Arabidopsis thaliana]
          Length = 516

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 19  ESCKFNPFDLTKIWPHAEYPLIPV 90
           E+ + NP DL ++W H +Y L+ +
Sbjct: 67  EASQMNPDDLKQLWIHLQYNLVSI 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,498,941
Number of Sequences: 28952
Number of extensions: 375915
Number of successful extensions: 1028
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)