Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30108
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    47   1e-06
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    47   1e-06
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    47   1e-06
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   3.1  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   4.1  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   5.5  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   5.5  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    24   7.2  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    24   9.6  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAV 68
           PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAV 68
           PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAV 68
           PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 418 PLGRFAVRDMRQTVAVGVIKAV 439


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 6   LGRFAVRDMRQTVAVG-VIKAVN 71
           +GRF +RD   TVAVG V+K ++
Sbjct: 640 MGRFTLRDQGTTVAVGKVVKILD 662


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 127 PLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTA 17
           P  + ++   T+PP  S+  T  + PT ++   + TA
Sbjct: 73  PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 6   LGRFAVRDMRQTVAVGVIK 62
           LGRF +R    TVA G++K
Sbjct: 571 LGRFILRRSGDTVAAGIVK 589


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 128 QEVARAVNSTIFHTTAILHSPKGVSKEKRATNSFL 232
           + +A A+N +I  TT +    K +  E+ ++ SFL
Sbjct: 369 EALAYAINPSILPTTLLTSYQKSIQDEENSSVSFL 403


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 244 LQGFNVTLFYNLYKVIHNISETFCYD 321
           ++ +N TL  ++++++ N  ETFC D
Sbjct: 180 VEPYNATL--SMHQLVENSDETFCID 203


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 214 PFFLRNTFR*MKYRSCMKNCAVNSSSYFLPLVAFSA 107
           PF   N  + + YR   +NCA  +SS  L     +A
Sbjct: 184 PFARINLMKGVAYREVTENCAAAASSLVLEFSMLTA 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,193,118
Number of Sequences: 5004
Number of extensions: 19538
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)