Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30108
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0548 + 4099386-4099847,4100435-4101316                           44   3e-05
03_01_0547 + 4093196-4093657,4094267-4095148                           44   3e-05
03_01_0544 + 4082528-4082989,4083585-4084466                           44   3e-05
03_01_0543 + 4076981-4077442,4078145-4079026                           44   3e-05
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903     29   1.3  
09_04_0400 + 17296414-17296854,17299212-17299403                       27   6.9  
11_06_0383 + 22965599-22966090                                         26   9.1  
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    26   9.1  
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873...    26   9.1  
01_05_0791 + 25267885-25267930,25268258-25268713,25268802-252688...    26   9.1  

>03_01_0548 + 4099386-4099847,4100435-4101316
          Length = 447

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAV 68
           PLGRFAVRDMRQTVAVGVIK V
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNV 429


>03_01_0547 + 4093196-4093657,4094267-4095148
          Length = 447

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAV 68
           PLGRFAVRDMRQTVAVGVIK V
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNV 429


>03_01_0544 + 4082528-4082989,4083585-4084466
          Length = 447

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAV 68
           PLGRFAVRDMRQTVAVGVIK V
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNV 429


>03_01_0543 + 4076981-4077442,4078145-4079026
          Length = 447

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAV 68
           PLGRFAVRDMRQTVAVGVIK V
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKNV 429


>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
          Length = 1135

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -2

Query: 257 LKPCKKYRKGMSL*P-FFPSK 198
           L PCKK +KGM++ P FF SK
Sbjct: 664 LNPCKKQKKGMNILPKFFTSK 684


>09_04_0400 + 17296414-17296854,17299212-17299403
          Length = 210

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 145 SSSYFLPLVAFSAALVTLPPPASLKLTALMTP 50
           SSS+  P ++FS+     PPP + +  A+  P
Sbjct: 16  SSSFMAPRISFSSDFALEPPPPAQQQPAVRAP 47


>11_06_0383 + 22965599-22966090
          Length = 163

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 181 KYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTA 62
           +++ C  +C V S    +PLV F A  V++P  ++L + +
Sbjct: 54  RHKRC--SCVVPSDHSLVPLVVFIAVRVSMPSSSALVIVS 91


>06_03_0912 +
           25896152-25896451,25896528-25897296,25897492-25897658,
           25898932-25901013,25901155-25901730,25904503-25905648,
           25907056-25908693
          Length = 2225

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 205 LRNTFR*MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTAL 59
           L NT R + ++ C K+    S + FL ++ FSA  +   P +   L+ L
Sbjct: 476 LPNTARALHFKDCRKSPKNYSETKFLRILDFSACTINELPDSISHLSLL 524


>06_01_1069 +
           8731567-8731632,8732120-8732281,8733028-8733081,
           8733557-8733630,8733706-8733786,8734902-8735079,
           8735336-8735506,8736113-8736202,8736284-8736331,
           8736447-8736562,8736655-8736733,8737101-8737223
          Length = 413

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 122 QGQEVARAVNSTIFHTTAILHSPKGVSKEKRATNSFLFYIFYKA 253
           QGQ V  A    + H   IL     +   K A NSFL  +  KA
Sbjct: 34  QGQNVYPADQQMLIHQGKILKDDTTLEGNKVAENSFLVIMLSKA 77


>01_05_0791 +
           25267885-25267930,25268258-25268713,25268802-25268832,
           25268949-25269255
          Length = 279

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 97  TLPPPASLKLTALMTPTAT 41
           TLPPP  +  T  MTPT T
Sbjct: 192 TLPPPTPMTPTTPMTPTPT 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,299,878
Number of Sequences: 37544
Number of extensions: 109410
Number of successful extensions: 355
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)