Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30108
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    46   1e-05
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    46   1e-05
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    46   1e-05
Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    29   1.5  
AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical...    27   4.6  
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAV 68
           PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 386 PLGRFAVRDMRQTVAVGVIKSV 407


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAV 68
           PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSV 441


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAV 68
           PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSV 441


>Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical
           protein F57B1.9a protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -3

Query: 184 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 29
           M Y +C    ++N   Y   L   ++A+V LPPP ++ +  ++   A  C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 220 KLIPFLYFLQGFNVTLFYNLYKVIHNISETFCYDC 324
           +  P +YFL G+  ++FY L+  ++ +S    + C
Sbjct: 91  RFAPQVYFLFGYGASIFYILFVALNCVSSILQFGC 125


>AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical
           protein Y47G6A.31 protein.
          Length = 212

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 253 FNVTLFYNLYKVIHNISETFCYDC 324
           F+   F +L K++ N   TFCY C
Sbjct: 39  FDFDDFQHLPKLLENCGHTFCYSC 62


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 6   LGRFAVRDMRQTVAVG-VIKAV 68
           LGRF +RD  +T+A+G V+K V
Sbjct: 510 LGRFTLRDEGKTIAIGKVLKVV 531


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,660,258
Number of Sequences: 27780
Number of extensions: 110683
Number of successful extensions: 277
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)