Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30108
         (387 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...    46   9e-06
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...    46   9e-06
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...    46   9e-06
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...    46   9e-06
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-...    44   5e-05
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    29   1.1  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    28   1.9  
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ...    28   2.5  
At4g31040.1 68417.m04408 proton extrusion protein-related contai...    27   3.3  
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ...    27   4.4  
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa...    27   5.8  
At1g71970.1 68414.m08319 expressed protein                             26   7.6  

>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score = 46.0 bits (104), Expect = 9e-06
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVN 71
           PLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVD 430


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 46.0 bits (104), Expect = 9e-06
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVN 71
           PLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVD 430


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 46.0 bits (104), Expect = 9e-06
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVN 71
           PLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVD 430


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 46.0 bits (104), Expect = 9e-06
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAVN 71
           PLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 408 PLGRFAVRDMRQTVAVGVIKSVD 430


>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
           domain-containing protein similar to SP|P13905
           Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
           thaliana}; contains Pfam profile PF03143: Elongation
           factor Tu C-terminal domain
          Length = 104

 Score = 43.6 bits (98), Expect = 5e-05
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   PLGRFAVRDMRQTVAVGVIKAV 68
           PLGRFA+RDMRQTV VGVIK+V
Sbjct: 74  PLGRFAIRDMRQTVGVGVIKSV 95


>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 253 FNVTLFYNLYKVIHNI--SETFCYDCKLKC 336
           F V LFY   ++  N   S  FCY C+L+C
Sbjct: 627 FKVGLFYKEVEIARNDGNSRLFCYICRLRC 656


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 253 FNVTLFYNLYKVIHNI--SETFCYDCKLKC 336
           F V L+Y   ++  N   S  FCY C+L+C
Sbjct: 587 FKVGLYYKEVEIARNDGNSRLFCYTCELRC 616


>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 578

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 223 VCSPFFLRNTFR*MKYRS-CMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPT 47
           +C    L + +  +K R  C+   A N  + F+    F A L+TLPPP+         P+
Sbjct: 453 LCQWLVLSDMYGVLKIREYCLDLVACNFEA-FVETHEFRAMLLTLPPPSGDSSLRTTVPS 511

Query: 46  ATVCLMS 26
           A   +M+
Sbjct: 512 APGAMMT 518


>At4g31040.1 68417.m04408 proton extrusion protein-related contains
           weak similarity to Proton extrusion protein pcxA
           (Swiss-Prot:P75028) [Synechocystis sp.]
          Length = 438

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 214 GYKLIPFLYFLQGFNVTLFYNLYKVIHNISET 309
           G  L   LY  QG    L +  YK+I+NIS+T
Sbjct: 325 GISLFVLLYANQGRVALLKFTGYKIINNISDT 356


>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 495

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 292 HNISETFCYDCKLKCKF 342
           + ++  FC+ C+L+CKF
Sbjct: 444 NGVTRPFCFHCELRCKF 460


>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
           profiles PF00085: Thioredoxin, PF00515: TPR Domain;
           similar to tetratricopeptide repeat protein 2
           (GI:7248701) [Drosophila melanogaster]; similar to DnaJ
           homolog subfamily C member 7 (Tetratricopeptide repeat
           protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
           [Homo sapiens]
          Length = 699

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 160 NCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVC 35
           +   +SSS+  PL++ S++  T P P S    A + PT  +C
Sbjct: 106 SATTSSSSHSQPLLSSSSSSATSPAPTS---PANVLPTGNIC 144


>At1g71970.1 68414.m08319 expressed protein
          Length = 225

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 178 YRSCMKNCAVNSSSYFLPLVAFSAALVTLPP 86
           Y SC + CAV  S  +LP    +A+   L P
Sbjct: 191 YGSCRRTCAVTESIVYLPRARKAASYDNLLP 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,086,673
Number of Sequences: 28952
Number of extensions: 95677
Number of successful extensions: 275
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)