Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30107
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    84   8e-18
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    83   1e-17
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    27   0.96 
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    27   1.3  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.9  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   3.9  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   5.1  
SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.7  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 84.2 bits (199), Expect = 8e-18
 Identities = 41/71 (57%), Positives = 54/71 (76%), Gaps = 3/71 (4%)
 Frame = -2

Query: 255 TAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRD 79
           TAA+RD+++ASVY  + +PKLY KL YCVSCAIHS+VVR RS++ RRIRT PP+  + RD
Sbjct: 47  TAAIRDLSEASVYSEYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRD 106

Query: 78  MSR--PQAVQR 52
             +  P AV +
Sbjct: 107 GKKVNPTAVAK 117



 Score = 81.4 bits (192), Expect = 6e-17
 Identities = 35/46 (76%), Positives = 40/46 (86%)
 Frame = -3

Query: 392 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVE 255
           MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVE 46


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 83.4 bits (197), Expect = 1e-17
 Identities = 39/71 (54%), Positives = 54/71 (76%), Gaps = 3/71 (4%)
 Frame = -2

Query: 255 TAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRD 79
           TAA+RD+++ASVY  + +PK+Y KL YCVSCAIH++VVR RS++ RRIRT PP+  + RD
Sbjct: 47  TAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRD 106

Query: 78  MSR--PQAVQR 52
             R  P A+ +
Sbjct: 107 GKRVNPAAIAK 117



 Score = 77.4 bits (182), Expect = 9e-16
 Identities = 34/46 (73%), Positives = 39/46 (84%)
 Frame = -3

Query: 392 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVE 255
           MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVE 46


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +3

Query: 258 YDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASS 371
           +DV + +L + + L   P+A+C  +S ++ TS++  SS
Sbjct: 117 FDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 311 RCVPKDKAIKKFVIRNIVE 255
           RCVPKDKAI   + +NI +
Sbjct: 20  RCVPKDKAILNPLAKNIAD 38


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 327 SHSFNVTTSMLGASSITAL---TSHVSNLRSGEQ 419
           +  FN+ TS   +SS+T+    +SH+SN  + ++
Sbjct: 97  ARDFNILTSNFASSSVTSAPTQSSHISNFTNSQK 130


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 146 LSGTDRRKTEESVLLPRVTSLGT 78
           ++  DR +TE SVL  RVT +G+
Sbjct: 1   MAAVDRSRTEISVLSDRVTDVGS 23


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 174 CVSCAIHSKVVRNRSKKDRRIRTPPKS 94
           C SC+   K   N+  + RR++  PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168


>SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 86

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 249 PPFYDVPNHELFDSLVLWHAPR 314
           PPF   P HE  +++V+   PR
Sbjct: 42  PPFVSFPRHEPSETIVISSKPR 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,565,847
Number of Sequences: 5004
Number of extensions: 26830
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)