Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30107
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...    87   8e-18
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    27   6.6  
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    27   6.6  
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399...    27   8.7  
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529...    27   8.7  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score = 86.6 bits (205), Expect = 8e-18
 Identities = 36/47 (76%), Positives = 42/47 (89%)
 Frame = -3

Query: 392 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVER 252
           MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQ 47



 Score = 73.3 bits (172), Expect = 8e-14
 Identities = 33/63 (52%), Positives = 48/63 (76%)
 Frame = -2

Query: 252 AAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMS 73
           AA+RD+ +A V+  + LPKLYAK+H+CVSCAIH+ +VR RS+++RR R PP+  F R + 
Sbjct: 48  AAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVP 106

Query: 72  RPQ 64
            P+
Sbjct: 107 DPR 109


>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 160 HPQQSCQEQIEERQKNPYSSQE 95
           +PQQS Q+Q EE+Q  P SS +
Sbjct: 616 NPQQSQQQQPEEQQSIPQSSNQ 637


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 173 ACHAPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVHRQC 57
           ACH     ++ G+D +K   +  +P    + +C  H  C
Sbjct: 705 ACHVDYNEEIRGSDEKKPAANKFIPSSQRVVSCAAHPFC 743


>08_02_1601 -
           28138206-28138597,28138928-28139054,28139150-28139914,
           28140714-28140929,28141433-28141903
          Length = 656

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 252 PFYDVPNHELFDSLVLWHAPRAVCASHSFN--VTTSMLGASSIT 377
           P+YD  +  LF+ L+    P A  +SH+F+  V T  +  S+ T
Sbjct: 448 PYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491


>03_02_0054 +
           5292167-5292336,5292434-5292526,5292828-5293003,
           5293076-5293122,5293732-5293801,5293960-5294186,
           5294274-5294327,5294470-5294545,5294679-5294884
          Length = 372

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/24 (45%), Positives = 20/24 (83%)
 Frame = +3

Query: 348 TSMLGASSITALTSHVSNLRSGEQ 419
           +SML  +S+++++S +SNLRS +Q
Sbjct: 164 SSMLRRASVSSISSFLSNLRSHDQ 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,035,840
Number of Sequences: 37544
Number of extensions: 207505
Number of successful extensions: 587
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)