Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30107
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...    85   2e-17
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)            83   8e-17
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)            83   8e-17
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain...    29   1.0  
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s...    29   1.8  
At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase, puta...    28   2.4  
At3g60200.1 68416.m06726 expressed protein hypothetical proteins...    28   3.2  
At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH) domain...    28   3.2  
At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains P...    27   4.2  

>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 34/47 (72%), Positives = 41/47 (87%)
 Frame = -3

Query: 392 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVER 252
           MT KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQ 47



 Score = 81.8 bits (193), Expect = 2e-16
 Identities = 38/66 (57%), Positives = 46/66 (69%)
 Frame = -2

Query: 252 AAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMS 73
           AA+RD+ +ASVY  + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP     R   
Sbjct: 48  AAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKED 107

Query: 72  RPQAVQ 55
            P+  Q
Sbjct: 108 TPKPAQ 113


>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 
          Length = 131

 Score = 83.0 bits (196), Expect = 8e-17
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = -3

Query: 392 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVER 252
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQ 47



 Score = 80.6 bits (190), Expect = 4e-16
 Identities = 38/66 (57%), Positives = 46/66 (69%)
 Frame = -2

Query: 252 AAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMS 73
           AA+RD+ +ASVY  + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP     R   
Sbjct: 48  AAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKED 107

Query: 72  RPQAVQ 55
            P+  Q
Sbjct: 108 TPKPGQ 113


>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
          Length = 133

 Score = 83.0 bits (196), Expect = 8e-17
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = -3

Query: 392 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVER 252
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQ 47



 Score = 80.6 bits (190), Expect = 4e-16
 Identities = 38/66 (57%), Positives = 46/66 (69%)
 Frame = -2

Query: 252 AAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMS 73
           AA+RD+ +ASVY  + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP     R   
Sbjct: 48  AAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKED 107

Query: 72  RPQAVQ 55
            P+  Q
Sbjct: 108 TPKPGQ 113


>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to clathrin assembly protein AP180 (GI:6492344) [Xenopus
           laevis]
          Length = 571

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 341 VKAVRCTNCARCVPKDKAIKKFVIRNIVERRRSEI 237
           V  V+ TN   C PKD+ ++K      V R R+++
Sbjct: 34  VAIVKATNHVECPPKDRHLRKIFAATSVTRARADV 68


>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
           similar to putative variable cytadhesin protein
           (GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
           PF02891: MIZ zinc finger domain
          Length = 842

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 306 APRAVCASHSFNVTTSMLGASSITALTSHVSNLRSGEQRTAE 431
           +P+ + A+++ N  TSM  A S     SHV++L + E RT++
Sbjct: 485 SPQDILATNAANFGTSMPAAQSSQFQGSHVTSLGNCEGRTSD 526


>At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase GB:AAF26356
           [GI:6715257][Phaseolus vulgaris]
          Length = 599

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 183 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAV 58
           L YC S  + S+V R  +     + TPP  +FP+  S   A+
Sbjct: 32  LSYCSSLPMASRVTRKLNVSSA-LHTPPALHFPKQSSNSPAI 72


>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
           At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
          Length = 305

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 183 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 52
           L    S A+ + V  N+SKK      PP   FPR +S P   +R
Sbjct: 26  LSLAASAAVSAAVEDNQSKKSNNNNHPPLLIFPRSVS-PYVTRR 68


>At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to Chain A, Calm-N N-Terminal Domain Of Clathrin
           Assembly Lymphoid Myeloid Leukaemia Protein, Pi(4,5)p2
           Complex (GP:13399999) {Homo sapiens}
          Length = 692

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 341 VKAVRCTNCARCVPKDKAIKKFVIRNIVERRRSEI 237
           V  V+ TN   C PKD+ ++K  +     R R+++
Sbjct: 34  VAIVKATNHVECPPKDRHLRKIFLATSAIRPRADV 68


>At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 599

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 306 APRAVCASHSFNVTTSMLGASSITALTSHVSNLRSGEQRTA 428
           A ++VC   + N +T ++   + +++TSH S L S E+ T+
Sbjct: 356 ALKSVCLPTTLNESTILINGDNSSSMTSH-SELSSNEEMTS 395


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,458,360
Number of Sequences: 28952
Number of extensions: 150724
Number of successful extensions: 421
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)