Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30106
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    29   0.96 
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    28   1.7  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    27   2.2  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   2.9  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   3.9  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    26   5.1  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    26   6.7  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   6.7  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   8.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.9  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 41  ANAEKLQKQAETSQTNKETLVISGGDGYEDFRSSTMTEDAGREDSTNHLLLW 196
           + A  L K A+  Q  K        DG+   RS TMT DA +  S + L +W
Sbjct: 11  SKAAILNKYADLPQNGKVMAEYIWIDGFNHLRSKTMTLDA-KPSSIDQLRVW 61


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
 Frame = -3

Query: 757 KHDIACAAASKTRVKSATALIPARSCRPNGK-QSTSPKTRHYGSSRSINGAFRYHKHWSP 581
           K+DI+   ASK  V  AT     +  +      S      ++   RS + + +  K+ S 
Sbjct: 99  KNDISTKVASKVSVTMATKFAEKKKKQDRENVDSKDNNITNFSLHRSFSASGKMEKNNSF 158

Query: 580 SSPNPSLATKGSTSKLTHRHSPLSSRRIFSVGRVSDPVVDSPK 452
              + S +   S+  L  + SP+  +  ++   V DP+  SP+
Sbjct: 159 KEVSTSKSYI-SSGYLHPKTSPIFKKNGYATENVVDPISSSPR 200


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 150 PRTQGERTPPTISFSGGS-ERISRPTGFCNDATQRNLRDLTVECPARNSIKHTRATASRN 326
           PRT+GE + P +S S  S + I      C   T+      ++ C A NS     ATAS N
Sbjct: 150 PRTEGESSSPNVSNSAVSGQVILWDVINCKQITKIEAHKDSLACLAFNSDGTMLATASDN 209


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
 Frame = -3

Query: 703 ALIPARSCRPNGK----QSTSPKTRHYGSSRSINGAFRYHKHWSPSSPNPSLATKG---- 548
           A +P+ S  P+       ST+  T H     S   A   H     +SPNPS  + G    
Sbjct: 137 AELPSGSVPPSASVSRANSTATTTPHKAGVVSNPAAANVHVLSVAASPNPSTPSNGPAPV 196

Query: 547 STSKLTHRHSPLSSRRIFSVGRVS 476
           ST+    R+     +RIFS   VS
Sbjct: 197 STTATPSRNPVTRLQRIFSQNSVS 220


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = -3

Query: 697 IPARSC--RPNGKQSTSPKTRHYGSSRSINGAFRYHKHWSPSS-PNPSLATKGSTSKLTH 527
           + A  C  RP G  + +P++        ++ +  Y +H S  S  NP  A     S+ + 
Sbjct: 439 LEAEECITRP-GSATNTPQSDRSLDINDLSRSSSYSRHLSHVSLSNPDFAIGSPMSQDSS 497

Query: 526 RHSPLSSRRIFSVGRVSDPVVDSPKHYS 443
            +S    RR  S    SDP  D  K+ S
Sbjct: 498 NYSSPLHRRKASDSNFSDPRFDDLKYLS 525


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
 Frame = +3

Query: 66  KPKPVKPTKRPSLSPEGTATKTSGVRR*PRTQGE-RTPPTISFSGGSERISRP-TGFCN- 236
           +PK +  +   + +   TAT T  V R P  +G    P T S    S  ++ P T     
Sbjct: 467 QPKSLYRSASAAANRPKTATTTDSVNRTPSQRGRVAVPSTPSVRSASRAMTSPRTPLPRV 526

Query: 237 DATQRNLRDLTVECPARNSIKHTR-ATASR 323
             TQ   R ++ E P+  S  + R  TA+R
Sbjct: 527 KNTQNPSRSISAEPPSATSTANRRHPTANR 556


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = -3

Query: 598 HKHWSPSSPNPSLATKGSTSKLTHRHSPLSSRRIFSV---GRVSDPVVDSPKHYSC*GQC 428
           H H+S S P+PS A         HR  P S +R+ S    G  S  VV S +   C    
Sbjct: 151 HDHFSVSDPSPSTAQ-------NHRSPPASCKRLSSCESSGSPSSRVVGSLQGSYCPSGT 203

Query: 427 LQHSG 413
             H G
Sbjct: 204 HLHEG 208


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +3

Query: 72  KPVKPTKRPSLSPEGTATKTSGVRR*PRTQGERTPPTISFSGGSERISRPTGFCNDATQR 251
           K  K  K+P  S E  A+ T+  +  P ++  R        GG+   SR T    DA   
Sbjct: 438 KMSKSIKKPEPSKEREASNTTSRKGVPPSKRRRV------RGGNNATSRTTSDNTDANDS 491

Query: 252 NLRDLTVE 275
             RDL +E
Sbjct: 492 FSRDLRLE 499


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = -3

Query: 724 TRVKSATALIPARSCRPNGKQSTSPKTRHYGSSRSINGAFRYHKHWSPSSPNPSLATKGS 545
           +R+ S++AL          K S    +R  G S ++  A       S S P  ++ +   
Sbjct: 5   SRIASSSALHGLDEMVSAHKPSPPLPSRRKGKS-ALRSALEKKNRKSKSKPKVTITS--D 61

Query: 544 TSKLTHRHSPLSS 506
           T K++ +HSP+SS
Sbjct: 62  TPKVSSQHSPVSS 74


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 648 KHVITDPPDPLTVLLGTTSTGH 583
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,431
Number of Sequences: 5004
Number of extensions: 54572
Number of successful extensions: 207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)