Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30106
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53440.1 68418.m06641 expressed protein                             31   1.1  
At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5) i...    31   1.1  
At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5) i...    31   1.1  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   2.6  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    29   3.4  
At3g54890.1 68416.m06081 chlorophyll A-B binding protein / LHCI ...    29   3.4  
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    29   3.4  

>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 2   QTSLKTKALSRRSANAEKLQKQAETSQTNKETLVISGGDGYEDFRSSTMTEDAGR 166
           +TSLK K     S+   ++ K++ +    KE      G+ YE++ SS+     G+
Sbjct: 25  ETSLKEKKSKEESSTTVRVSKESGSGDKRKEYYDSVNGEYYEEYTSSSSKRRKGK 79


>At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5)
           identical to receptor-like protein kinase 5 [Arabidopsis
           thaliana] GI:13506747; contains Pfam domain PF00069:
           Protein kinase domain; identical to cDNA receptor-like
           protein kinase 5 (RLK5) GI:13506746
          Length = 680

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +2

Query: 116 DGYEDFRSSTMTEDAGREDSTNHLLLWRV*TNFTAYRVL 232
           DG+  F SSTM+E AG+  +++   L+ V T  TAY+ L
Sbjct: 159 DGFTSFVSSTMSEAAGKAANSSR-KLYTVNTELTAYQNL 196


>At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5)
           identical to receptor-like protein kinase 5 [Arabidopsis
           thaliana] GI:13506747; contains Pfam domain PF00069:
           Protein kinase domain; identical to cDNA receptor-like
           protein kinase 5 (RLK5) GI:13506746
          Length = 674

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +2

Query: 116 DGYEDFRSSTMTEDAGREDSTNHLLLWRV*TNFTAYRVL 232
           DG+  F SSTM+E AG+  +++   L+ V T  TAY+ L
Sbjct: 159 DGFTSFVSSTMSEAAGKAANSSR-KLYTVNTELTAYQNL 196


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 69  PKPVKPTKRPSLSPEGTATKTSGVRR*PRTQGERTPPTISFSGGSERISRPTG 227
           P+   P   PS +P  +A  T+     P T+    PPT +   G+   + P+G
Sbjct: 43  PRATAPAPSPSANPPPSAPTTAPPVSQPPTESPPAPPTSTSPSGAPGTNVPSG 95


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/82 (29%), Positives = 36/82 (43%)
 Frame = -3

Query: 742 CAAASKTRVKSATALIPARSCRPNGKQSTSPKTRHYGSSRSINGAFRYHKHWSPSSPNPS 563
           C    K  V   +A IP+ +  P+   + +P +   GS     GA   H   S S  +P+
Sbjct: 118 CKKGQKLNVVVISARIPSTAQSPH---AAAPGSSTPGSMTPPGGA---HSPKSSSPVSPT 171

Query: 562 LATKGSTSKLTHRHSPLSSRRI 497
            +  GST+     HSP SS  +
Sbjct: 172 TSPPGSTTPPGGAHSPKSSSAV 193


>At3g54890.1 68416.m06081 chlorophyll A-B binding protein / LHCI
           type I (CAB) identical to chlorophyll A/B-binding
           protein [Arabidopsis thaliana] GI:16207; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 241

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 271 TVKSLRFLCVASLQNPVGREIRSDPPEKEMVGGVLSPCVLGHRRTPE 131
           T+ ++ FL +A +++   R +  DP +K+  GG   P  LG+ + P+
Sbjct: 140 TILAIEFLAIAFVEHQ--RSMEKDPEKKKYPGGAFDP--LGYSKDPK 182


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -3

Query: 670 GKQSTSPKTRHYGSSRSINGAFRYHKHWSPSSPNPSLATKGSTSKLTHRHSPLSSRR 500
           GK++   + +   +S++       H   SPS P+   ATK + +KL  + SP S+ +
Sbjct: 467 GKENQKSRKKGSATSKTEREESNGHHETSPSIPSYMQATKSAKAKLRLQGSPKSAEQ 523


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,248,716
Number of Sequences: 28952
Number of extensions: 316008
Number of successful extensions: 1054
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)