Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30103
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   2.6  
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    26   6.0  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   7.9  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +1

Query: 433 VLRTSDIQIREGI*LPSAGIGPRVSQRRFGRVGGRIPVTPSESFQKRISGASEKDIVHSG 612
           V R   ++IREG      G+GP            ++   P+E  ++R+ G SE   + +G
Sbjct: 336 VSRAMTVEIREG-----RGVGPEKDHCYL-----QLSHLPAEILKERLPGISETAAIFAG 385

Query: 613 LDYTME 630
           +D T E
Sbjct: 386 VDVTKE 391


>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 464 RESNYHLLESVQESLSGGSVAWEAAS 541
           R S YH + S  E+  GG+V W+AAS
Sbjct: 188 RASYYHRVSSDVEA--GGNVTWDAAS 211


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -3

Query: 433 HVIEVLEPLEE*DGDTTSVDVEVGDHENVAIDEDLVC-SRCGGTVGG---LRNDLSLD 272
           H I++  PL+  +GD  +V  ++G  +   ID + +C +R   T  G   LRN +SL+
Sbjct: 53  HGIQINNPLKTIEGDVVAVLKKLGYLKTNNIDAEHLCIARAARTDKGVHTLRNLISLN 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,978
Number of Sequences: 5004
Number of extensions: 53741
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)