Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30103
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)            138   5e-33
SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               37   0.018
SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               37   0.018
SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34)             29   3.6  
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_46830| Best HMM Match : Succ_DH_flav_C (HMM E-Value=3.2e-37)        29   3.6  
SB_55327| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.8  
SB_23964| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)               28   6.4  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score =  138 bits (333), Expect = 5e-33
 Identities = 66/84 (78%), Positives = 74/84 (88%), Gaps = 3/84 (3%)
 Frame = +2

Query: 278 AKIIAEAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFK 457
           AKIIAE ANGPTTP AD+ILI    LVIPDLY+NAGGVTVS+FEWLKN+NHVS+GRLT+K
Sbjct: 361 AKIIAEGANGPTTPEADQILIANKQLVIPDLYLNAGGVTVSYFEWLKNINHVSFGRLTWK 420

Query: 458 YERESNYHLLESVQESLS---GGS 520
           YE+ESNYHLLESVQ+SL    GGS
Sbjct: 421 YEKESNYHLLESVQKSLERHFGGS 444



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 43/65 (66%), Positives = 55/65 (84%)
 Frame = +1

Query: 508 QRRFGRVGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMRFNLGLDL 687
           +R FG     IP+TPSE+FQ++ISGASE+DIVHSGL++TMERSA+ IM+ A  +NLGLD+
Sbjct: 438 ERHFGG-SSHIPITPSEAFQEQISGASERDIVHSGLEFTMERSAKQIMRCAEEYNLGLDI 496

Query: 688 RTAAY 702
           RTAAY
Sbjct: 497 RTAAY 501



 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 38/51 (74%), Positives = 46/51 (90%)
 Frame = +1

Query: 4   QGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEEYRIENGT 156
           +GFGNVGLH+CRYL RAGA CIGVIE DGS++NPDGI+PK LE+Y++E GT
Sbjct: 258 RGFGNVGLHSCRYLHRAGAKCIGVIERDGSLWNPDGIDPKELEDYKLEKGT 308



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +3

Query: 156 VVGFPGAKAYEGENMLYEKCDILVPAAIEQVINR 257
           +  +PGAK  E EN+L  +CDIL+PAA E+ I +
Sbjct: 309 ITNYPGAKMVE-ENLLEAECDILIPAANEKQITK 341


>SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 448

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = +2

Query: 287 IAEAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGR 445
           +AE AN P+ P+A ++     IL  P    NAGGV VS  E  +N    S+ R
Sbjct: 342 VAEGANMPSEPSAIEVFQKAKILYGPGKASNAGGVAVSGLEMSQNSLRSSWSR 394



 Score = 32.3 bits (70), Expect = 0.39
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 1   VQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKAL 129
           V G GNV       + + G   + + +  G++Y+PDGI  + L
Sbjct: 236 VSGSGNVAQFATEKVTQLGGKVVSLSDSSGTVYDPDGITKEKL 278



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 171 GAKAYEGENMLYEKCDILVPAAIEQVINR 257
           G + +EG+   + KCD+ +P A +  +N+
Sbjct: 300 GVEFHEGKRPWFLKCDVALPCATQNEVNK 328


>SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 486

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = +2

Query: 287 IAEAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGR 445
           +AE AN P+ P+A ++     IL  P    NAGGV VS  E  +N    S+ R
Sbjct: 380 VAEGANMPSEPSAIEVFQKAKILYGPGKASNAGGVAVSGLEMSQNSLRSSWSR 432



 Score = 32.3 bits (70), Expect = 0.39
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 1   VQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKAL 129
           V G GNV       + + G   + + +  G++Y+PDGI  + L
Sbjct: 274 VSGSGNVAQFATEKVTQLGGKVVSLSDSSGTVYDPDGITKEKL 316



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 171 GAKAYEGENMLYEKCDILVPAAIEQVINR 257
           G + +EG+   + KCD+ +P A +  +N+
Sbjct: 338 GVEFHEGKRPWFLKCDVALPCATQNEVNK 366


>SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34)
          Length = 722

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 218 HSCTRRHRTGHKQDNAHRI 274
           + CT +HRTG+   N HRI
Sbjct: 673 YGCTNKHRTGYGYTNIHRI 691


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 1   VQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKAL 129
           + G GNV  +     +  G   + + + +G++Y+P GI+   L
Sbjct: 563 ISGSGNVAQYALEKTLELGGKVVTLSDSNGTVYDPSGIDSAKL 605


>SB_46830| Best HMM Match : Succ_DH_flav_C (HMM E-Value=3.2e-37)
          Length = 333

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/82 (29%), Positives = 42/82 (51%)
 Frame = +1

Query: 433 VLRTSDIQIREGI*LPSAGIGPRVSQRRFGRVGGRIPVTPSESFQKRISGASEKDIVHSG 612
           V R+  I+IREG      G+GP         V  ++   P+E+ + R+ G SE  ++ +G
Sbjct: 21  VSRSMTIEIREG-----RGVGPMKDH-----VYLQLSHLPAETLKTRLPGISETAMIFAG 70

Query: 613 LDYTMERSARAIMKTAMRFNLG 678
           +D T  R    ++ T + +N+G
Sbjct: 71  VDVT--RDPIPVLPT-VHYNMG 89


>SB_55327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 498 KSLSAAVRSRGRPHPRHSLRVLPEEN 575
           K + A +  +GR + R+ LR LPE+N
Sbjct: 139 KGIDAGIWEKGREYVRYELRPLPEQN 164


>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 489  NRSKSLSAAVRSRGRPHPRHSLRVLPEENLRRLREGHRALRTRL-HHGEIR*GHHEDSHE 665
            +R K+L   +R R     R+ LR   E +  RLR+ H A R RL +  E       D HE
Sbjct: 946  DRHKALCNRLRDRHEAS-RNRLRDRHEASRNRLRDRHEASRNRLRNRHEASRNRLRDRHE 1004

Query: 666  V-QPRFR 683
              + RFR
Sbjct: 1005 ASRNRFR 1011



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
 Frame = +3

Query: 522  SRGRPHPRHS-----LRVLPEENLRRLREGHRALRTRLH-HGEIR*GHHEDSHEV---QP 674
            SR R H RH      LR   E + +RLR+ H+AL  RL    E       D HE    + 
Sbjct: 918  SRNRLHDRHEASRNRLRDRHEASRKRLRDRHKALCNRLRDRHEASRNRLRDRHEASRNRL 977

Query: 675  RFRSEDSR 698
            R R E SR
Sbjct: 978  RDRHEASR 985


>SB_23964| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)
          Length = 1482

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 421  VLEPLEE*DGDTTSVDVEVGDHENVAIDEDLVC-SRCGGTVGGLRNDLSLDPVSVV 257
            +L+ +++ DGDT   DV+V D + +  D D+V        V  +  D  LD V VV
Sbjct: 848  LLDDVDDVDGDTLLDDVDVVDEDTLLADVDVVDEDTLLDDVDVVDGDTLLDDVDVV 903



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 427  IEVLEPLEE*DGDTTSVDVEVGDHENVAIDEDLVCS-RCGGTVGGLRNDLSLDPVSVV 257
            + +L+ ++  DGDT   DV+V D + +  D D+V S      V  +  D  LD V VV
Sbjct: 1072 VTLLDDVDVVDGDTLLDDVDVVDEDTLLDDVDVVDSVTLLDDVDVVDGDTLLDDVDVV 1129


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 259 QRSQDPS*DHCGGRQRSHHTCCRQDPHRSQHSRDPRPLHQR 381
           +RS+ PS  H     RSH +  R    R +HSR   P H+R
Sbjct: 244 RRSRSPSPHH-----RSHRSRSRSRSPRRRHSRSRSPTHRR 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,490,187
Number of Sequences: 59808
Number of extensions: 454930
Number of successful extensions: 1556
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)