Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30103
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 142 2e-34
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 30 1.8
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 30 1.8
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 30 1.8
U41555-9|AAB37034.1| 646|Caenorhabditis elegans Hypothetical pr... 29 4.3
D30651-1|BAA21637.1| 646|Caenorhabditis elegans flavoprotein su... 29 4.3
Z81102-4|CAB03204.2| 639|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z69659-6|CAA93486.2| 639|Caenorhabditis elegans Hypothetical pr... 28 7.4
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 28 7.4
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 28 7.4
Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear recep... 27 9.8
AF098995-11|AAC67488.2| 415|Caenorhabditis elegans Hypothetical... 27 9.8
>Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical
protein ZK829.4 protein.
Length = 536
Score = 142 bits (345), Expect = 2e-34
Identities = 69/89 (77%), Positives = 80/89 (89%), Gaps = 1/89 (1%)
Frame = +2
Query: 248 HKQDNAHRIQAKIIAEAANGPTTPAADKILIDR-NILVIPDLYINAGGVTVSFFEWLKNL 424
HK+ NA RIQAKIIAEAANGPTTPAAD+IL+ R + L+IPD+Y+N+GGVTVS+FEWLKNL
Sbjct: 369 HKE-NASRIQAKIIAEAANGPTTPAADRILLARGDCLIIPDMYVNSGGVTVSYFEWLKNL 427
Query: 425 NHVSYGRLTFKYERESNYHLLESVQESLS 511
NHVSYGRLTFKY+ E+N LL SVQESLS
Sbjct: 428 NHVSYGRLTFKYDEEANKMLLASVQESLS 456
Score = 84.6 bits (200), Expect = 6e-17
Identities = 38/59 (64%), Positives = 49/59 (83%)
Frame = +1
Query: 526 VGGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMRFNLGLDLRTAAY 702
VG PV P+ +F +I+GASEKDIVHSGL+YTM+RS AI++TA ++NLGLD+RTAAY
Sbjct: 459 VGKDCPVEPNAAFAAKIAGASEKDIVHSGLEYTMQRSGEAIIRTAHKYNLGLDIRTAAY 517
Score = 77.8 bits (183), Expect = 7e-15
Identities = 33/52 (63%), Positives = 43/52 (82%)
Frame = +1
Query: 1 VQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEEYRIENGT 156
+QGFGNVGLHT RYL RAG+ IG+ E+D ++YNPDGI+PK LE+++ NGT
Sbjct: 284 IQGFGNVGLHTHRYLHRAGSKVIGIQEYDCAVYNPDGIHPKELEDWKDANGT 335
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +3
Query: 156 VVGFPGAKAYEG-ENMLYEKCDILVPAAIEQVI---NRTTLTGSKLRSLRRPPTVP 311
+ FPGAK ++ ++YEKCDI VPAA E+ I N + + + PT P
Sbjct: 336 IKNFPGAKNFDPFTELMYEKCDIFVPAACEKSIHKENASRIQAKIIAEAANGPTTP 391
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -3
Query: 394 GDTTSVDVEVGDHENVAIDEDLVCSRCGGTVGGLRND 284
G+TT ++VG E VA D L + G VGGLR D
Sbjct: 2408 GETT---IDVGTDETVASDIGLTTHKFSGIVGGLRID 2441
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -3
Query: 394 GDTTSVDVEVGDHENVAIDEDLVCSRCGGTVGGLRND 284
G+TT ++VG E VA D L + G VGGLR D
Sbjct: 2408 GETT---IDVGTDETVASDIGLTTHKFSGIVGGLRID 2441
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -3
Query: 394 GDTTSVDVEVGDHENVAIDEDLVCSRCGGTVGGLRND 284
G+TT ++VG E VA D L + G VGGLR D
Sbjct: 2408 GETT---IDVGTDETVASDIGLTTHKFSGIVGGLRID 2441
>U41555-9|AAB37034.1| 646|Caenorhabditis elegans Hypothetical
protein C03G5.1 protein.
Length = 646
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 550 PSESFQKRISGASEKDIVHSGLDYTME 630
P+E Q+R+ G SE ++ +G+D T E
Sbjct: 353 PAEQLQQRLPGISETAMIFAGVDVTKE 379
>D30651-1|BAA21637.1| 646|Caenorhabditis elegans flavoprotein
subunit of complex II protein.
Length = 646
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 550 PSESFQKRISGASEKDIVHSGLDYTME 630
P+E Q+R+ G SE ++ +G+D T E
Sbjct: 353 PAEQLQQRLPGISETAMIFAGVDVTKE 379
>Z81102-4|CAB03204.2| 639|Caenorhabditis elegans Hypothetical
protein F07C6.4b protein.
Length = 639
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 146 SILYSSKALGLMPSGL*MEPSCSITPMQVA-PARTR*RQVWSPTLPKP 6
S L+S+ ++G MPS + S S PM A P T+ + P +P+P
Sbjct: 58 SSLHSNSSIGTMPSAKIGDGSTSSLPMSSAKPMSTQTSEPQLPDVPEP 105
>Z69659-6|CAA93486.2| 639|Caenorhabditis elegans Hypothetical
protein F07C6.4b protein.
Length = 639
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 146 SILYSSKALGLMPSGL*MEPSCSITPMQVA-PARTR*RQVWSPTLPKP 6
S L+S+ ++G MPS + S S PM A P T+ + P +P+P
Sbjct: 58 SSLHSNSSIGTMPSAKIGDGSTSSLPMSSAKPMSTQTSEPQLPDVPEP 105
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 187 KARTCFTRSATFLYPPPSNRS*TGQRSQDP 276
K TC +S T L PPS S T +R++ P
Sbjct: 520 KVSTCSPKSTTSLLLPPSTSSTTRERTRHP 549
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 187 KARTCFTRSATFLYPPPSNRS*TGQRSQDP 276
K TC +S T L PPS S T +R++ P
Sbjct: 520 KVSTCSPKSTTSLLLPPSTSSTTRERTRHP 549
>Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical
protein C06C6.4 protein.
Length = 363
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 284 IIAEAANGPTTPAADKILID-RNILV--IPDLYINAGGVTVSFFEWLKNLNHVSYGRLTF 454
++ + A+ + K+ D +N+++ + D YI+ G + FFE + +NHV G F
Sbjct: 277 LLFDGAHANISADCSKMCHDIKNVILRELRDYYIDNGVDEMRFFETIDTVNHVEKGESKF 336
>AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear receptor
NHR-63 protein.
Length = 365
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 284 IIAEAANGPTTPAADKILID-RNILV--IPDLYINAGGVTVSFFEWLKNLNHVSYGRLTF 454
++ + A+ + K+ D +N+++ + D YI+ G + FFE + +NHV G F
Sbjct: 279 LLFDGAHANISADCSKMCHDIKNVILRELRDYYIDNGVDEMRFFETIDTVNHVEKGESKF 338
>AF098995-11|AAC67488.2| 415|Caenorhabditis elegans Hypothetical
protein F58E1.11 protein.
Length = 415
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 436 RHVIEVLEPLEE*DGDTTSVDVEVGDHENVAIDEDLV 326
R E + +EE +GD TSV + + D + I DLV
Sbjct: 361 RRFKEKIVRVEESNGDLTSVTLSMNDSAELVIQRDLV 397
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,386,312
Number of Sequences: 27780
Number of extensions: 321449
Number of successful extensions: 1038
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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