Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30102
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.8  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   6.4  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   6.4  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   6.4  
SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex...    25   8.5  

>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +3

Query: 15  AVIYGTGGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGNLVAGSIVSQLTAAAMVAPTP 194
           A+ +  G L+TP V PV+                    G    GSI++Q + A  V P P
Sbjct: 624 AIAFHQGALVTPSVPPVIATVSKTNTTNTGVQQRGN-VGVTTTGSILTQSSPALPVQPVP 682

Query: 195 *GDAKHHPFS-TSLQDRTFSVYLEL 266
              +K  P + +SL +  ++  + L
Sbjct: 683 LAYSKPAPTTKSSLTELAYNTNVSL 707


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 627  EYSAPDGTPVKFTYTADENGYQPQ-SELLPVAPPMP 731
            +Y   +   V+ T T DE+G+Q Q +    VA P+P
Sbjct: 955  DYEGTEDNIVRQTTTVDEDGHQEQTTSTTKVAHPIP 990


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 659  LHRGSVRRRVFILTLDGENIDIINFLQG-SR*LSAD 555
            L  G V+ + F+L +D E IDI+ +  G  R +S D
Sbjct: 970  LRSGLVKHKAFVLAVDQEYIDIVIYEFGLERRISLD 1005


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 26  WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 133
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex
           subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 261 ELKCI*IFNKFGNSCPYRSQQYEILGFG 344
           + K I   N+   SC ++S    +LGFG
Sbjct: 32  QAKIIGYMNRISESCVFKSSMAGVLGFG 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,951
Number of Sequences: 5004
Number of extensions: 54018
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)