Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30102
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    79   4e-17
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.2  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 79.0 bits (186), Expect = 4e-17
 Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = +3

Query: 510 VNPDG-FSFGYETDNGISAQSSGSLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENG 686
           VN DG +   +ET NGIS Q SG  K+VDN   +  QG   Y+APDG  V  TY ADENG
Sbjct: 36  VNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVSITYVADENG 95

Query: 687 YQPQSELLPVAPPMP 731
           +Q Q   +P APP+P
Sbjct: 96  FQVQGSHIPTAPPIP 110


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 724 GGATGSNSLCGWYPFSSA 671
           GGA G+ SLC  YP   A
Sbjct: 122 GGAAGATSLCFVYPLDFA 139


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 724 GGATGSNSLCGWYPFSSA 671
           GGA G+ SLC  YP   A
Sbjct: 122 GGAAGATSLCFVYPLDFA 139


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
 Frame = +3

Query: 291 FGNSCPYRSQQYEILGFG-----FMRMCRQ 365
           F N+ PY    Y + G G      +  CRQ
Sbjct: 436 FANNQPYTKDSYTVAGMGETIEDLLHFCRQ 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,614
Number of Sequences: 438
Number of extensions: 4148
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)