Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30101
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...   113   3e-26
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    30   0.44 
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   4.1  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     26   7.2  

>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  113 bits (272), Expect = 3e-26
 Identities = 56/84 (66%), Positives = 64/84 (76%)
 Frame = +1

Query: 511 YGRVAPRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIY 690
           YGRVAPRSGLA K+ ID GAGVID DYRG+V V+LFN+SD DF +K GDRIAQLI E+I 
Sbjct: 56  YGRVAPRSGLASKHSIDTGAGVIDADYRGHVRVLLFNYSDVDFPIKVGDRIAQLILERIV 115

Query: 691 YPVLQEVANLSVTQRGDGGFGSTG 762
            P +  V +L  T RG  GFGSTG
Sbjct: 116 NPPVILVESLEATVRGANGFGSTG 139



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 25/48 (52%), Positives = 31/48 (64%)
 Frame = +2

Query: 365 RLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPG 508
           +LSE A  P +GS  +AG DL +A +  VP RGK LV TDL I +P G
Sbjct: 7   KLSEKATIPTKGSANSAGYDLYAAAECIVPRRGKVLVDTDLAIAVPEG 54


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 193 CFDFKCLHLHNLI*DYHKLTFSNFIFDIKRILALEI 300
           C D  C HLH+L  D H L  S   F +  +++ E+
Sbjct: 289 CLDVDCQHLHSL--DTHSLDISTHTFKLPPLMSKEV 322


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 761 PVEPNPPSPL*VTDKLATSCNTG 693
           PVEP+PPSP  +   + TS +TG
Sbjct: 230 PVEPDPPSPEEICCIMYTSGSTG 252


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 166 LSNITYYRFCFDFKCLHLHNLI*DYHK-LTFSN 261
           L  +T    CFDF+  H HN +  + K L FS+
Sbjct: 129 LERMTLELICFDFRVRHPHNYMVKFAKSLKFSS 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,455
Number of Sequences: 5004
Number of extensions: 50381
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)