Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30101
         (807 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16604| Best HMM Match : dUTPase (HMM E-Value=0.078)                 80   2e-15
SB_20580| Best HMM Match : dUTPase (HMM E-Value=0.0013)                80   2e-15
SB_35498| Best HMM Match : dUTPase (HMM E-Value=6.1)                   63   3e-10
SB_24792| Best HMM Match : 7tm_1 (HMM E-Value=8.7e-09)                 30   2.5  
SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)                29   4.4  
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)                    28   7.7  

>SB_16604| Best HMM Match : dUTPase (HMM E-Value=0.078)
          Length = 62

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 40/60 (66%), Positives = 46/60 (76%)
 Frame = +1

Query: 532 SGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 711
           S LA K+ IDVGAGVID DYRGNVGVVLFN   + + VK+GDRIAQLI E+I  P + EV
Sbjct: 2   SSLAWKHQIDVGAGVIDRDYRGNVGVVLFNLGSSAYEVKQGDRIAQLIVERIQTPSIVEV 61


>SB_20580| Best HMM Match : dUTPase (HMM E-Value=0.0013)
          Length = 103

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 40/60 (66%), Positives = 46/60 (76%)
 Frame = +1

Query: 532 SGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 711
           S LA K+ IDVGAGVID DYRGNVGVVLFN   + + VK+GDRIAQLI E+I  P + EV
Sbjct: 2   SSLAWKHQIDVGAGVIDRDYRGNVGVVLFNLGSSAYEVKQGDRIAQLIVERIQTPSVVEV 61


>SB_35498| Best HMM Match : dUTPase (HMM E-Value=6.1)
          Length = 90

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 27/57 (47%), Positives = 39/57 (68%)
 Frame = +2

Query: 338 KIQPILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPG 508
           + + +L F +L++    P RGS  AAG DL SAYD ++PA+GK LVKTD+ + +P G
Sbjct: 20  RAETVLYFKKLTKLGLPPTRGSSHAAGYDLYSAYDVSIPAQGKALVKTDIAVAIPDG 76


>SB_24792| Best HMM Match : 7tm_1 (HMM E-Value=8.7e-09)
          Length = 303

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +1

Query: 538 LALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 711
           +AL N + +G  +I++  R      LFN + TDF    G  +A LIC+ I    + EV
Sbjct: 32  VALCNILVIGTFIINQHLRKKSMYFLFNLALTDFLF--GATVAPLICQVISTSNVDEV 87


>SB_54381| Best HMM Match : Trigger_C (HMM E-Value=0.55)
          Length = 607

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = -1

Query: 720 QISNFL*HRIVDLLTNKLCNSVSFFHT-KVCVRVIKKNNSNITSIVLINNTGTNINEI 550
           +++N + +++ + +TNK+ N V+   T KV   V  K N+N+T+ V  N T    N++
Sbjct: 220 KVTNNVTNKVTNEVTNKVNNKVTNKVTKKVTNNVTNKVNNNVTNKVTNNVTNKVTNKV 277


>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
          Length = 809

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 675 NKLCNSVSFFHTKVCVRVIKKNNSNITSIVLINNTGTNINEILQS 541
           NK+ N+    +    + VI  NN+N   IV+I+NT T+  +  Q+
Sbjct: 624 NKIINNYDIIYNNDTI-VIDSNNNNDIIIVIISNTTTSCQQQQQN 667


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,352,251
Number of Sequences: 59808
Number of extensions: 354396
Number of successful extensions: 668
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)