Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30101
         (807 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate nucleotido...   126   1e-29

>At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate
           nucleotidohydrolase family contains Pfam profile:
           PF00692 deoxyuridine 5'-triphosphate nucleotidohydrolase
          Length = 166

 Score =  126 bits (305), Expect = 1e-29
 Identities = 62/84 (73%), Positives = 67/84 (79%)
 Frame = +1

Query: 511 YGRVAPRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIY 690
           Y R+APRSGLA K+ IDVGAGVID DYRG VGV+LFNHSD DF VK GDRIAQLI EKI 
Sbjct: 82  YARIAPRSGLAWKHSIDVGAGVIDADYRGPVGVILFNHSDADFEVKFGDRIAQLIIEKIV 141

Query: 691 YPVLQEVANLSVTQRGDGGFGSTG 762
            P + EV +L  T RGDGGFGSTG
Sbjct: 142 TPDVVEVDDLDETVRGDGGFGSTG 165



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 30/54 (55%), Positives = 34/54 (62%)
 Frame = +2

Query: 347 PILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPG 508
           P  K  +LSE A  P RGS  +AG DL SA D  VPARGK L+ TDL I +P G
Sbjct: 27  PFFKVKKLSEKAVIPTRGSPLSAGYDLSSAVDSKVPARGKALIPTDLSIAVPEG 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,676,173
Number of Sequences: 28952
Number of extensions: 247951
Number of successful extensions: 534
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)