Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30100
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    38   0.001
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    31   0.11 
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    27   1.7  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    26   4.0  
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    26   4.0  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   7.0  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    25   9.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.2  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   9.2  

>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 108 SYGNQGSYGNQGSYGNQGSFGNQGSFGNQGS 200
           +YG+  +YGN GS  N GS+G   ++G+ GS
Sbjct: 57  TYGSSNNYGNYGSSNNYGSYGASNTYGSNGS 87



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 108 SYGNQGSYGNQGSYGNQGSFGNQGSFGNQGS 200
           +YGN GS  N GSYG   ++G+ GS  N G+
Sbjct: 63  NYGNYGSSNNYGSYGASNTYGSNGSSNNYGN 93



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQGS 200
           GS  N GSYG   +YG+ GS  N G++G   S
Sbjct: 68  GSSNNYGSYGASNTYGSNGSSNNYGNYGATNS 99



 Score = 34.3 bits (75), Expect = 0.015
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQGS 200
           G+YG+  +YG+ G+    GS G+  ++GN G+
Sbjct: 65  GNYGSSNNYGSYGASNTYGSNGSSNNYGNYGA 96



 Score = 34.3 bits (75), Expect = 0.015
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQG 197
           GSYG   +YG+ GS  N G++G   S G+ G
Sbjct: 74  GSYGASNTYGSNGSSNNYGNYGATNSNGDAG 104



 Score = 31.1 bits (67), Expect = 0.14
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 117 NQGSYGNQGSYGNQGSFGNQGSFG 188
           +  +YG+  +YGN GS  N GS+G
Sbjct: 54  SNSTYGSSNNYGNYGSSNNYGSYG 77



 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 135 NQGSYGNQGSFGNQGSFGNQGS 200
           +  +YG+  ++GN GS  N GS
Sbjct: 54  SNSTYGSSNNYGNYGSSNNYGS 75


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 123 GSYGNQGSYGNQGSFGNQGSFG 188
           GS G +G +G +G FG +G FG
Sbjct: 448 GSRGGRGGFGGRGGFGGRGGFG 469



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 141 GSYGNQGSFGNQGSFGNQG 197
           GS G +G FG +G FG +G
Sbjct: 448 GSRGGRGGFGGRGGFGGRG 466


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +3

Query: 105 GSYGNQGSY--GNQGSYGNQGSFGNQGSFG 188
           G  G Q +Y  G +G Y N G + N   FG
Sbjct: 85  GGEGRQNNYRGGREGGYSNGGGYRNNRGFG 114


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -1

Query: 574 HLFLLIFQSPKNHFQDTEVNAYTSCRNKKRVSLIIQSGYSF*DRCCFY 431
           H F+ +  +PK  +    VNA++     +R++  I S ++    CC++
Sbjct: 34  HFFIPLPNTPKKFYS---VNAFSPLLKARRMTATIVSNHNVGCSCCYF 78


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 388 LRNIASSGRY*PAQRYGNHFVVQWNIKSIQNNRLITLCPTRVSLILLPN 242
           L N   + +  P      HF  +WNI  +++++L  LC   +   L  N
Sbjct: 93  LSNSIGTRKLDPTGELAAHFQQKWNIPVVRHSKLKPLCTEELYTYLSNN 141


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 505 SCRNKKRVSLIIQSGYSF*DRCCFYFTVEQSNQSL*TYKLRNIAS 371
           S ++KK++  +  SG S  +   FY    +SN SL    LR I S
Sbjct: 11  SVQSKKKILELTVSGVSDLNAVYFYLIYTKSNSSLNCESLRPILS 55


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/34 (23%), Positives = 22/34 (64%)
 Frame = -2

Query: 492 KNVFHLLFNRAIVFKIDVVFISQSNNQTKVYRLI 391
           KN+F   F+RA +    ++F+S+  +++++  ++
Sbjct: 168 KNLFSKKFSRAFIKAFALIFVSELGDRSQIATIV 201


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQG 197
           G +G  G  G+ G     G FG  G FG +G
Sbjct: 188 GGFGGFGG-GSGGPPPGPGGFGGFGGFGGEG 217


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 501 AGIKNVFHLLFNRAIVFKIDVVFISQSNNQTKVYRLISYVILLVRDDINPPN 346
           A  KN +  LFN  + F I+ + +S++     V      VIL +R  ++  N
Sbjct: 68  ASHKNFYKKLFNPELDFMIEQICLSKNGRFLAVVGKSKIVILGLRSKLSEQN 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,242
Number of Sequences: 5004
Number of extensions: 41002
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)