Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30100
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 33 0.12
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 33 0.12
At3g52440.1 68416.m05767 Dof-type zinc finger domain-containing ... 33 0.16
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 32 0.37
At3g07560.1 68416.m00903 glycine-rich protein 31 0.49
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 30 1.5
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 29 2.6
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 29 2.6
At4g19200.1 68417.m02833 proline-rich family protein contains pr... 29 3.4
At3g28830.1 68416.m03597 expressed protein 28 4.5
At5g35980.1 68418.m04333 protein kinase family protein contains ... 28 6.0
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 28 6.0
At5g46730.1 68418.m05757 glycine-rich protein 27 7.9
At3g18810.1 68416.m02389 protein kinase family protein contains ... 27 7.9
At2g46140.1 68415.m05738 late embryogenesis abundant protein, pu... 27 7.9
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 27 7.9
At2g05510.1 68415.m00583 glycine-rich protein 27 7.9
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 27 7.9
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQG 197
GSYG +G YG G GN+G G G++G
Sbjct: 45 GSYGGRGGYGGGGGRGNRGGGGGGYQGGDRG 75
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 102 QGSYGNQGSYGNQGSYGNQGSFGNQGSFGNQG 197
+G YG G GN+G G G++G G+ G
Sbjct: 50 RGGYGGGGGRGNRGGGGGGYQGGDRGGRGSGG 81
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQG 197
GSYG +G YG G GN+G G G++G
Sbjct: 45 GSYGGRGGYGGGGGRGNRGGGGGGYQGGDRG 75
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 102 QGSYGNQGSYGNQGSYGNQGSFGNQGSFGNQG 197
+G YG G GN+G G G++G G+ G
Sbjct: 50 RGGYGGGGGRGNRGGGGGGYQGGDRGGRGSGG 81
>At3g52440.1 68416.m05767 Dof-type zinc finger domain-containing
protein DNA binding protein - Hordeum
vulgare,PID:e1334094
Length = 247
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 478 VKHVFYSCN*YTHLPPYPGNDFLGIEISAGKGVWCDCNFI 597
V+H+ C Y LPP+PG + L ++ + GVW D I
Sbjct: 166 VEHIVEECG-YNGLPPFPGEELLSLDTN---GVWSDALLI 201
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 31.9 bits (69), Expect = 0.37
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 102 QGSYGNQGS-YGNQGSYGNQGSFGNQGSFG 188
+G YG G YG G YG G +G G +G
Sbjct: 584 RGGYGGGGGGYGGGGGYGGGGGYGGGGGYG 613
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQ 194
G YG G YG G YG + G +G +
Sbjct: 598 GGYGGGGGYGGGGGYGGGYGGASSGGYGGE 627
>At3g07560.1 68416.m00903 glycine-rich protein
Length = 304
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 102 QGSYGNQGSYGNQGSYGNQGSFGNQGSFGNQG 197
+G YG G YG+ G YG G G+ G G
Sbjct: 126 RGGYGGGGLYGSSGMYGGGAMGGYGGTMGGYG 157
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQG 197
GS +G YG G YG+ G +G G+ G G
Sbjct: 121 GSSMYRGGYGGGGLYGSSGMYGG-GAMGGYG 150
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -2
Query: 228 NYQSFHGYPSFLGYQSYLGYRSFLGYHSFLGYHSFLGYHSFLGYQNFHGRY 76
+Y + GY + GY +Y G S + F GY GY G Q F+ Y
Sbjct: 266 DYSMYSGYGGYGGYGAYAG-NSMVNPAGFYGYGGGYGYGYGYGGQMFNMGY 315
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +3
Query: 105 GSYGNQGS-YGNQGSY-GNQGSFGNQGSFG 188
G YG G YG G Y G G +G G +G
Sbjct: 128 GGYGGGGGGYGGSGGYGGGAGGYGGSGGYG 157
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQGSFGN 191
G YG+ G +G+ G+ +GS + G+ G+
Sbjct: 199 GGYGSSGGFGSSGNTYGEGSSASAGAVGD 227
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQGSL 203
G G G YG+ G +G+ G+ +GS + G++
Sbjct: 193 GHGGAGGGYGSSGGFGSSGNTYGEGSSASAGAV 225
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 111 YGNQGSYGNQGSYGNQGSFGNQGSFGNQG 197
Y NQG YG G G+ +GNQ ++G G
Sbjct: 337 YSNQG-YGYGGYSGSDSGYGNQAAYGVVG 364
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQGS 200
G G+ YGNQ +YG G + G N GS
Sbjct: 346 GYSGSDSGYGNQAAYGVVGGRPSGGGSNNPGS 377
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 111 YGNQGSYGNQGSYGNQGSFGNQGSFGNQG 197
YGNQ +YG G + G N GS G G
Sbjct: 354 YGNQAAYGVVGGRPSGGGSNNPGSGGYMG 382
>At4g19200.1 68417.m02833 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 179
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQGSF 185
G +G + +G G +G G FG G F
Sbjct: 149 GKHGGKFKHGKHGKHGKHGMFGGGGKF 175
>At3g28830.1 68416.m03597 expressed protein
Length = 539
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQGSFGNQGS 200
G ++GS QGS QGS QGS QGS
Sbjct: 295 GKSSSKGSASAQGSASAQGSASAQGSASAQGS 326
>At5g35980.1 68418.m04333 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 956
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +3
Query: 111 YGNQGSYGNQGSYG--NQGSF--GNQGSFGNQGSL 203
Y + SYG+ GSYG N G+ + GS+G G++
Sbjct: 527 YSHANSYGSIGSYGSYNDGTIQDNSYGSYGGTGNM 561
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = +3
Query: 105 GSYGNQGSYGNQGSYGNQG-----SFGNQGSFGNQG 197
GSYG+ GSYG G S G GS+G G
Sbjct: 521 GSYGSSSGRSGGGSYGGYGGSSGRSGGGGGSYGGSG 556
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +3
Query: 105 GSYGNQGSYGNQGSY--GNQGSFGNQGSFGNQGS 200
G G GS+G G Y G G G G++G G+
Sbjct: 195 GGAGGGGSHGGAGGYGGGGGGGSGGGGAYGGGGA 228
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 102 QGSYGNQGSYGNQGSYGNQGSFGNQGSFGNQGS 200
QG+ N G+ GN + N + GN + N G+
Sbjct: 68 QGNNNNDGNNGNNNNDNNNNNNGNNNNDNNNGN 100
>At2g46140.1 68415.m05738 late embryogenesis abundant protein,
putative / LEA protein, putative similar to SP|P46518
Late embryogenesis abundant protein Lea14-A {Gossypium
hirsutum}; contains Pfam profile PF03168: Late
embryogenesis abundant protein
Length = 166
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +1
Query: 115 VTKEAMVTKEAMVTKEASVTKVALVTKEAWVTMEALVVLGDPGSVTESGKL*LDTTLLIY 294
V A V+ + ++ + +++ + K A T+ A + DPGS+ SG LD + +
Sbjct: 54 VDYHAKVSVKNPYSQSIPICQISYILKSATRTI-ASGTIPDPGSLVGSGTTVLDVPVKVA 112
Query: 295 YSV 303
YS+
Sbjct: 113 YSI 115
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +3
Query: 102 QGSYGNQGSYGNQGSYG---NQGSFGNQGSFGNQG 197
QG Y G G G YG +G +G+ G +G QG
Sbjct: 143 QGGYNRGGGGGYGGGYGGDRREGGYGD-GGYGGQG 176
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 105 GSYGNQGSYGNQGSYGNQGSFGNQG 179
G YG G +G G YG G G G
Sbjct: 90 GHYGGGGGHGGGGHYGGGGHHGGGG 114
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Frame = +3
Query: 105 GSYGNQGSY----GNQGSYGNQGSF-GNQGSFG 188
G YG SY G G YG S+ GN G +G
Sbjct: 147 GGYGGNSSYSGNAGGGGGYGGNSSYGGNAGGYG 179
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,014,419
Number of Sequences: 28952
Number of extensions: 205108
Number of successful extensions: 522
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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