Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30099
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0191 + 14041201-14043894,14044354-14044632                       32   0.38 
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901...    31   0.66 
03_01_0654 - 4791998-4792085,4792250-4792674                           31   0.66 
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631...    28   4.6  
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581...    28   6.1  
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    27   8.1  
05_07_0056 + 27382708-27383871,27384450-27384818                       27   8.1  

>08_02_0191 + 14041201-14043894,14044354-14044632
          Length = 990

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
 Frame = +2

Query: 20   VAKKQDLPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSIYLYNITYKRILKDEIE 199
            V K +  PPP   +P+        S    + +FA  +   +GS+  YN  + R   D + 
Sbjct: 664  VRKDRQQPPP---RPLQIVFPIGLSGVKVWLLFALTLVQFLGSVTTYNAKFWRFSPDSVS 720

Query: 200  MRSAKMAIYPA---LLAERDRDI*SSSVGTGMLRQS*CETFPDGRSVLTTENASTN 358
            ++ +K + +     +    DR + SS++   +   S C      R VL +  A ++
Sbjct: 721  IQGSKESNFRVAYLMCRSSDRQLASSNIALNIQTSSSCHVLHKCRQVLNSCQAPSS 776


>10_08_0132 +
           15087274-15087797,15089544-15089732,15090048-15090186,
           15090454-15090594,15091420-15091569,15091908-15092011,
           15092258-15092432,15092714-15092823,15092906-15093073,
           15093180-15093345,15093771-15094049,15094445-15094543,
           15094619-15094676,15095145-15095336,15095693-15095724,
           15096023-15096117,15096321-15096426
          Length = 908

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 199 LNLILKNSLVSYVIEIYRTNCHSNEPSKH 113
           L+ +LK S VSYV E + TNC  +E ++H
Sbjct: 755 LDAVLKLSEVSYVEECFSTNCQPDEFNQH 783


>03_01_0654 - 4791998-4792085,4792250-4792674
          Length = 170

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 2   MAEAFQVAKKQDLPPPGGYKPIPF-KRIPAK 91
           MA    +   QD PPPGG+ P+ + +RIP K
Sbjct: 82  MASVKDMPVLQDGPPPGGFAPVRYARRIPTK 112


>02_04_0245 +
           21262645-21262754,21262851-21262997,21263100-21263156,
           21263256-21263442,21264700-21264925,21265474-21266003
          Length = 418

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 355 CRRVLRSKYRPPIRERLASALPQHPCSYGAAL 260
           CR+ +R   R  + E LA ++P H   YG  +
Sbjct: 111 CRKEIRCLRRKDVMEALAKSVPAHTIRYGCRI 142


>01_06_0575 -
           30357556-30357582,30357698-30357944,30358039-30358161,
           30358275-30358301,30358475-30358633,30359764-30359948,
           30360225-30360293,30360432-30362354,30363018-30363339,
           30363506-30363543
          Length = 1039

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 338 TENASTNLFPPTSWSNQSSKSTMHTVTSKSGT 433
           +EN S  L PP+  S Q+S ST+  +  K GT
Sbjct: 290 SENVSLKLIPPSDMSVQTS-STLKDLVKKEGT 320


>12_02_0133 -
           14057469-14057497,14057516-14057581,14057770-14058363,
           14058450-14058570,14058926-14059320,14059410-14059534,
           14059646-14059876,14060012-14060484,14060587-14060693,
           14060842-14061172,14061222-14061250,14061345-14061901,
           14062170-14062255,14062344-14062406,14062646-14063001,
           14063101-14063356
          Length = 1272

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 311 FPDGRSVLTTENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNVL 442
           F   +S  +   A +++ PPT  S   +    H VTS   T++L
Sbjct: 490 FKKPKSCESANKAKSSILPPTEESKVVNPPVSHNVTSDRDTSIL 533


>05_07_0056 + 27382708-27383871,27384450-27384818
          Length = 510

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 239 AERDRDI*SSSVGTG--MLRQS*CETFPDGRSVLTTENASTNLFP 367
           A+ D    S+  G G  + R S C + P GRS  T +  S+ +FP
Sbjct: 20  ADLDSGQCSNGAGNGNPIQRTSSCGSIPSGRSTSTIKRMSSAIFP 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,365
Number of Sequences: 37544
Number of extensions: 294394
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)