Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30099
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25306| Best HMM Match : GRIM-19 (HMM E-Value=0.00062)               32   0.39 
SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15)          32   0.39 
SB_28665| Best HMM Match : TGF_beta (HMM E-Value=1.2e-22)              29   3.6  
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)             29   3.6  
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                29   3.6  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         28   6.3  
SB_11552| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_8763| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_25306| Best HMM Match : GRIM-19 (HMM E-Value=0.00062)
          Length = 100

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 259 LKQLRRNRDAEAELMRDVPGWEVG-TYYGERVYKLIPPDQLV 381
           L+ L+ N + EA +M+DV GW VG + Y    +    P+Q++
Sbjct: 59  LRGLKENEELEALIMKDVKGWNVGESVYHTNKWVTPMPEQVL 100


>SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15)
          Length = 802

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 343 LRSKYRPPIRE--RLASALPQHPCSYGAALDI 254
           +R  YR P+ E  + A A+P  P SYG ALD+
Sbjct: 333 IRGIYRKPLSEFRKTAPAIPAQPISYGQALDL 364


>SB_28665| Best HMM Match : TGF_beta (HMM E-Value=1.2e-22)
          Length = 350

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 142 NCHSNEPSKHSISAEIRFSGDPFKWNWLVAPRR 44
           +C      +     E+    + F WNW++AP+R
Sbjct: 249 DCDPYSHERRCCRYELTVDFEKFSWNWIIAPKR 281


>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
          Length = 482

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 8   EAFQVAKKQDLP-PPGGYKPIPFKRIPAKSYFSGYTMFAG 124
           E+ +VA  Q LP  PG  +P P +R+PA    SG T  AG
Sbjct: 147 ESLRVAAAQQLPVAPGPSEPQPGRRLPADDAASG-TASAG 185


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 266 SSVGTGMLRQS*CETFPDGRSVLTTENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNVLT 445
           SS   G+   + C    D  S  +T +++T  F PT+    +S +T+    + S TNV  
Sbjct: 84  SSTTIGVCPTNSCTNLKDSTSGSSTISSATICFGPTNRCTTTSSTTISVGPTNSCTNVKD 143

Query: 446 SS 451
           S+
Sbjct: 144 ST 145


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 215  MAIYPALLAERDRDI*SSSVGTGMLRQS*CETFPDGRSVLTT 340
            +AIYP   + R RD+  S   TG   Q    T PDG S  +T
Sbjct: 1663 VAIYPLDKSNRGRDVSGSRRPTGRFSQVNFATGPDGVSKTST 1704


>SB_11552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 750

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 331 YRPPIRERLASALPQHPCSYGAALDIPISFCQ*SRVYRHFSGS 203
           YR P  +    A+P HP SYG A+   +S    S V + + GS
Sbjct: 291 YRRPYSQSELPAIPAHPMSYGDAVHF-LSKMAGSAVPKEWRGS 332


>SB_8763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 408 CIVLLEDWFDQLVGGNKFVDAFSVVSTDLPSGNVSHQ 298
           C VL +  F QL G +  +   +V+   LPSG V +Q
Sbjct: 234 CYVLEKGLFTQLFGRDAILTNANVLLVGLPSGQVMYQ 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,816,104
Number of Sequences: 59808
Number of extensions: 315109
Number of successful extensions: 857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)