Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30099
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043693-7|AAB97540.1|  171|Caenorhabditis elegans Hypothetical ...    55   3e-08
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ...    30   1.4  
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.      30   1.4  
Z83239-2|CAB05802.1|  182|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>AF043693-7|AAB97540.1|  171|Caenorhabditis elegans Hypothetical
           protein C34B2.8 protein.
          Length = 171

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 27/63 (42%), Positives = 38/63 (60%)
 Frame = +1

Query: 226 PCSTGRKR*GYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYKLIPPDQLVEPIFQEYY 405
           P  T  +   +LK L +NR  E E+M+DVPGW+ GT+YGE VY  +  D+  +P   E +
Sbjct: 74  PFLTAERDRYWLKLLAKNRALEEEIMKDVPGWKTGTWYGEPVYFTL-GDKWWDPTATEVF 132

Query: 406 AHS 414
            HS
Sbjct: 133 VHS 135



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 26/75 (34%), Positives = 37/75 (49%)
 Frame = +2

Query: 29  KQDLPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSIYLYNITYKRILKDEIEMRS 208
           +QD+PP GGY+   F R   K  +S  T+ A   G T   +Y      K+ + ++ E   
Sbjct: 8   RQDMPPKGGYRAFNFHRTFPKLVWSPGTVVAAIFGATAYGVYAALEGKKKDITEKFEDVD 67

Query: 209 AKMAIYPALLAERDR 253
              A+ P L AERDR
Sbjct: 68  INNAMEPFLTAERDR 82


>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
           protein.
          Length = 1173

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 214 NGDIPCSTGRKR*GYLK-QLRRNRDAEAELMRDVPGWEVGTYYGE 345
           NG + CST      Y+  ++ RN+  +AE  ++V  W VG +  E
Sbjct: 218 NGVVRCSTAVGTPDYISPEVLRNQGQDAEFGKEVDWWSVGVFIYE 262


>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
          Length = 1173

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 214 NGDIPCSTGRKR*GYLK-QLRRNRDAEAELMRDVPGWEVGTYYGE 345
           NG + CST      Y+  ++ RN+  +AE  ++V  W VG +  E
Sbjct: 218 NGVVRCSTAVGTPDYISPEVLRNQGQDAEFGKEVDWWSVGVFIYE 262


>Z83239-2|CAB05802.1|  182|Caenorhabditis elegans Hypothetical
           protein T09F5.2 protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 92  SYFSGYTMFAGFIGMTIGSIYLYNITYKR---ILKDEIEMRSAKMAI 223
           S+F G+T+ A F+ +  G  ++Y   Y R   I+  E+E  S K ++
Sbjct: 32  SFFIGFTVSAVFVLIAFGVSFIYFAQYDRTVKIIPKELEKSSRKSSL 78


>U40800-5|AAO91743.1|  936|Caenorhabditis elegans Hypothetical
           protein D2096.3 protein.
          Length = 936

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 384 FDQLVGGNKFVDAFSVVSTDLPSGNV 307
           +D  +GG +F D F  ++T LPS N+
Sbjct: 165 WDTSIGGMQFADKFIQIATYLPSKNI 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,926,778
Number of Sequences: 27780
Number of extensions: 242531
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)