Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30099
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.23 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   3.8  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   6.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 322 PIRERLASALPQHPCSYGAALDIPISF 242
           P+RE+L+S+ P  P      + +P+S+
Sbjct: 809 PVREKLSSSQPMQPPQQNPYMFLPVSY 835


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 172 VSYVIEIYRTNCHSNEPSKHSISAEIR 92
           +S VI I   N H  +PS H ++  +R
Sbjct: 311 LSVVITIVILNVHYRKPSTHKMAPWVR 337


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 337 SKYRPPIRERLASALPQHPCSYGAALDIP 251
           + Y P +R        QH   YGAA+ +P
Sbjct: 7   NSYIPDLRNGGVEHPHQHQQHYGAAVQVP 35


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 104 GYTMFAGFIGMTIG 145
           GYT+F GF+ +  G
Sbjct: 84  GYTLFKGFVHLGAG 97


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 208 GSHLNLILKNSLVSYVIEIYRTNCHSNEPSKHSISAEIR 92
           GS+ N I+     S V+ +   N H   P ++ + + I+
Sbjct: 326 GSYFNCIMFMVASSVVLTVLVLNFHHRTPDRYVMPSWIK 364


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 208 GSHLNLILKNSLVSYVIEIYRTNCHSNEPSKHSISAEIR 92
           GS+ N I+     S V+ +   N H   P ++ + + I+
Sbjct: 326 GSYFNCIMFMVASSVVLTVLVLNFHHRTPDRYVMPSWIK 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,988
Number of Sequences: 438
Number of extensions: 3321
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)