Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30097
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    60   1e-10
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    59   2e-10
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    40   1e-04
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   0.49 
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    26   1.5  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   2.0  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   3.5  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    24   6.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   6.1  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    24   8.0  
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       24   8.0  
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    24   8.0  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    24   8.0  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 60.1 bits (139), Expect = 1e-10
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +1

Query: 1   DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
           DK+ I      TI+WLD N  A K+EYE KQKELEG+ NPI+ K+YQ
Sbjct: 564 DKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 59.3 bits (137), Expect = 2e-10
 Identities = 26/47 (55%), Positives = 34/47 (72%)
 Frame = +1

Query: 1   DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
           DK+T+      TI+WLDSN  A K+E+E KQKELE + NPI+ K+YQ
Sbjct: 564 DKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 39.9 bits (89), Expect = 1e-04
 Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   DKQTILDKCNVTIKWLDSN-QLADKEEYEHKQKELEGIYNPIITKMY 138
           DKQ +LD      +WL+ + + A KEE+E ++++L+ + +PI  K+Y
Sbjct: 595 DKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 0.49
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 125 LRRCTRVPEESPEVCRASRAEHPEPEVPPPGLEALAPPSRRSINQHS 265
           L  C   PEE PE   +  A     EV  P L  + P   R +N+ S
Sbjct: 218 LINCIAHPEEVPETIHSLGATTFVTEVQAPTLSIMVPLLARGLNERS 264


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 149 EESPEVCRASRAEHPEPE 202
           EE+P    AS  EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261


>SPBC17D11.05 |tif32||translation initiation factor
            eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +2

Query: 143  VPEESPEVCRA--SRAEHPEPEVPPPGLEALAPPSRRSINQ 259
            V  +SP   R   SR   P  E   P   A  PPSRR+  Q
Sbjct: 891  VSRDSPRYSRGGYSRGSVPPRETLAPSKGAYVPPSRRNQQQ 931


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +1

Query: 31  VTIKWLDSNQLADKEEYEHKQKE---LEGIYNPIITKMYQ 141
           V +K + +++L DK+ ++  Q+E   L  +++P I  +YQ
Sbjct: 49  VALKMVYNDELEDKDTWKRLQREVTILRQLHHPNIITLYQ 88


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 1   DKQTILD-KCNVTIKWLDSNQLADKEEYEHKQKELE 105
           +++TI D K  + +   +  ++   EEY  KQKEL+
Sbjct: 434 EEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 191 PEPEVPPPGLEALAPP 238
           P P  PPPG+    PP
Sbjct: 761 PPPPPPPPGVAGAGPP 776


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 100 LEGIYNPIITKMY 138
           L+G+Y+ IITK+Y
Sbjct: 282 LDGVYDTIITKLY 294


>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 191 PEPEVPPPGLEALAPP 238
           P+P +PPP     APP
Sbjct: 103 PQPHIPPPRKSDEAPP 118


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 140 RVPEESPEVCRASRAEHPEPEVP 208
           ++ ++ P   RASRA   EP+ P
Sbjct: 235 KLGDKGPAAARASRAAAEEPQAP 257


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 4/21 (19%), Positives = 14/21 (66%)
 Frame = -3

Query: 320 FNQGEVTRWLLQVGLSVVWNV 258
           ++ G   +W + +G++++W +
Sbjct: 140 YSHGTTAQWRISIGINLLWGI 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,081
Number of Sequences: 5004
Number of extensions: 20050
Number of successful extensions: 90
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)