Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30097
(358 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 73 5e-14
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 6e-11
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 51 2e-07
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 36 0.013
SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.64
SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_8472| Best HMM Match : TatC (HMM E-Value=1.4) 27 3.4
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 27 4.5
SB_58627| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 27 4.5
SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19) 27 4.5
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 27 5.9
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1) 27 5.9
SB_1024| Best HMM Match : Ank (HMM E-Value=0) 27 5.9
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0) 26 7.8
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_14297| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7) 26 7.8
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 73.3 bits (172), Expect = 5e-14
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
DK+ ILDKC +KWLD+NQ A+K+E+E+ QKELE + NPIITK+YQ
Sbjct: 568 DKKAILDKCTEVLKWLDTNQTAEKDEFEYHQKELEKVCNPIITKLYQ 614
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 63.3 bits (147), Expect = 6e-11
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 141
+++ ++ +C T+ WL+ NQ A+KEE + QKELEG+ NPIITK+YQ
Sbjct: 660 EREKVISRCKATLDWLEHNQSAEKEEIDAHQKELEGVCNPIITKLYQ 706
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 51.2 bits (117), Expect = 2e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMY 138
DK T+ +K + WL+ N LA+KEE+E ++KEL+ + +PI+ K++
Sbjct: 567 DKDTVKNKVEEVLNWLEKNSLAEKEEFEEQEKELQRVCSPIMAKVH 612
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 35.5 bits (78), Expect = 0.013
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYNP 120
DK+TI + I W+D NQ A E+++ ++++ + +Y+P
Sbjct: 1262 DKKTITEAVEKAISWMDKNQDASVEDFKKEKRKWKMLYSP 1301
>SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 699
Score = 29.9 bits (64), Expect = 0.64
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 1 DKQTILDKCNVTIKW-LDSNQLADKEEYEHKQKELEGIYNPIITKM 135
DK+ L + T+K+ LD +LA KE++ +KE EG + TKM
Sbjct: 115 DKEQELSELRKTVKYALDQEKLA-KEQFGDLKKEFEGYKKKMDTKM 159
>SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
Frame = +1
Query: 1 DKQTILDKCNVTIKWLDSN------QLADK-EEYEHKQKELEGI 111
D + +++C TIK LDSN Q+AD+ EE + ++ELE +
Sbjct: 190 DCEKEVNRCEATIKTLDSNLKDLRQQVADRDEELNNNRQELESV 233
>SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 137 TRVPEESPEVCRASRAEHPEPEVPPPGLEALAPPSRRSINQH 262
TR+P+ESPE R ++PPP PP SI+ H
Sbjct: 187 TRMPDESPEPTRPPPPLDDLDDLPPP---PPPPPEDDSIHNH 225
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -1
Query: 205 HLRLRVLRPGSPAYLRGLLRHPGTSS*LSDCKCLPILSACAH 80
HL +RVL P P L LS C CLP+ +C H
Sbjct: 1140 HLSVRVLSPVCPRVFTCLYACVN----LSVCVCLPVCFSCVH 1177
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -1
Query: 205 HLRLRVLRPGSPAYLRGLLRHPGTSS*LSDCKCLPILSACAH 80
HL +RVL P P L LS C CLP+ +C H
Sbjct: 1177 HLSVRVLSPVCPRVFTCLYACVN----LSVCVCLPVCFSCVH 1214
>SB_8472| Best HMM Match : TatC (HMM E-Value=1.4)
Length = 476
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 95 KNWKAFTIR*LRRCTRVPEESPEVCRASRAEHPEPEVP 208
KN+ ++ L R P+E ++ SR PEP P
Sbjct: 8 KNFDEVVVQLLMRMYEPPDEGSDIATFSRESDPEPNPP 45
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +2
Query: 134 CTRVPEESPEVCRASRAEHPEPEVPPPGLEALAPP 238
C +P P P P PPPG L PP
Sbjct: 722 CAGLPPPPPSPQPGCAGLPPPPPPPPPGCAGLPPP 756
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +2
Query: 146 PEESPEVCRASRAEHPEPEVPPPGLEALAPP 238
P P + + P P PPPG L PP
Sbjct: 698 PPPPPPLLSGTLPMPPPPPPPPPGCAGLPPP 728
>SB_58627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 80 MSTSRKNWKAFTIR*LRRCTRVPEESPEVCRASR 181
+ T+++N + IR LR+C P E RASR
Sbjct: 6 VETTQRNTRRQNIRSLRKCRNAPVEQKGCRRASR 39
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 28 NVTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKM 135
+++ KW SN A E+E+K KE++ Y I ++
Sbjct: 756 DISEKWSKSNVDAPYSEFENKMKEIKDHYEREIERL 791
>SB_50337| Best HMM Match : Extensin_1 (HMM E-Value=0.19)
Length = 86
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 191 PEPEVPPPGLEALAPPS 241
P+P+ PPPG PPS
Sbjct: 28 PKPDTPPPGTNIPTPPS 44
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 142 PGTSS*LSDCKCLPILSACAHTPPCRPAG 56
PGT + KC+ +L C P C PAG
Sbjct: 2968 PGTYQCADNRKCISVLEVCDGIPSC-PAG 2995
>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
Length = 630
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -3
Query: 338 GSIFIYFNQGEVTRWLLQVGLSVVWN 261
G+ +Y G+ +WL +VG+ W+
Sbjct: 604 GNRIVYVTSGKYLKWLPEVGIDASWD 629
>SB_1024| Best HMM Match : Ank (HMM E-Value=0)
Length = 891
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 146 PEESP--EVCRASRAEHPEPEVPPPGLEALAPPSRRS 250
PE+ P EV A R E P+ E PP PP + S
Sbjct: 771 PEQPPIGEVESAVRREQPKSEKTPPSTTPSPPPKQPS 807
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/53 (26%), Positives = 20/53 (37%)
Frame = +2
Query: 53 PTSWPTRRSMSTSRKNWKAFTIR*LRRCTRVPEESPEVCRASRAEHPEPEVPP 211
P S+P S S S+K W+ L+R ++ E P PP
Sbjct: 45 PVSFPAASSQSISQKPWQQSPTSTLQRTSQTNNELSNALNTHPKRWPPVNTPP 97
>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
Length = 1115
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 37 IKWLDSNQLADKEEYEHKQKELEGIYNPIITK 132
++W D D EY+ + ++E N ++TK
Sbjct: 805 MQWKDKMSQKDSMEYKQTRSKIESAINNVVTK 836
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 146 PEESPEVCRASRAEHPEPEVPPPGLEALAPPSR 244
P +P RA+ P+P V P A APP R
Sbjct: 220 PRPAPARDRAASGPGPKPAVKPRDRLATAPPGR 252
>SB_14297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 7 QTILDKCNVTIKWLDSNQ 60
QT+LDKC +WL +N+
Sbjct: 164 QTLLDKCQYIEEWLTANE 181
>SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1415
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 13 ILDKCNVTIKWLDSNQLADKEEYEHKQKELEGIYN 117
ILD + +W D N ++ + +LEGIYN
Sbjct: 770 ILDNNSTKCRWWDFNANGGMGDWSAEGCQLEGIYN 804
>SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)
Length = 273
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 146 PEE-SPEVCRASRAEHPEPEVPPPGLEALAPPS 241
PEE SP+ + +HPE E P + PPS
Sbjct: 70 PEEPSPDDQLPTGGDHPETEFEAPASDTAPPPS 102
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,107,982
Number of Sequences: 59808
Number of extensions: 191128
Number of successful extensions: 752
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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