Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30096
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0893 + 28566436-28566501,28566624-28566903,28567002-285671...    32   0.62 
12_02_0997 - 25121029-25121126,25121365-25121405,25121565-251218...    29   3.3  
07_03_1408 - 26353389-26355191                                         29   3.3  
12_02_0436 - 19076486-19076609,19076860-19076944,19077321-190774...    29   4.4  
01_01_0208 + 1780275-1781123                                           29   4.4  
06_03_0282 + 19142841-19143344,19144653-19144814,19146308-19146388     29   5.8  
06_03_0540 - 21923763-21923945,21924027-21924776,21924895-219253...    28   7.6  

>03_05_0893 +
           28566436-28566501,28566624-28566903,28567002-28567188,
           28567353-28567423,28567523-28567600,28567687-28567774,
           28567875-28567930,28568054-28568121
          Length = 297

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -1

Query: 713 GLGRCVAYFNAGTADWGSPADVEAVLEEDVHVSRLRANKRPQPPRLLTPVMRS 555
           GL RC   F+A  +   + A   A       +      + P+PPR+LTP+ RS
Sbjct: 29  GLRRCAGEFSAIAS---ASASASAAASRRAGIGGTTPRRNPKPPRVLTPLRRS 78


>12_02_0997 -
           25121029-25121126,25121365-25121405,25121565-25121805,
           25121884-25121946,25122719-25122852,25122904-25123006,
           25123079-25123281,25123382-25123468,25123886-25124014,
           25124241-25124315,25124731-25124816,25124926-25125162
          Length = 498

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 172 IFGEWERSEDG-SALRAAFNAFKFPSSDKYDSNATFASALE 291
           IFG WE SE G  A+    +    P S KYD       ALE
Sbjct: 129 IFGRWEGSEAGLGAVATGSHVDAIPFSGKYDGVVGVLGALE 169


>07_03_1408 - 26353389-26355191
          Length = 600

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/55 (21%), Positives = 32/55 (58%)
 Frame = +3

Query: 321 DAYGKRRKREVTDESTALTMPVGQLREEVTVESNQILTTQRREPSQVARQRDGTG 485
           DA  + RKR++ D+  + ++PV +++ E + E  +   +++++  +  +   G+G
Sbjct: 478 DAADEGRKRKIEDDDASASVPVKKIKVEESAEEVEGEKSEKKKKKKKDKGEQGSG 532


>12_02_0436 -
           19076486-19076609,19076860-19076944,19077321-19077486,
           19078213-19078889,19079372-19079475,19079582-19079817
          Length = 463

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 673 RIGEVRRMWKRCWRRTCTSPGYEPTSD 593
           R+G+    W R +RR CTSP   PT D
Sbjct: 192 RLGDFGYSWSRRFRRRCTSPA--PTGD 216


>01_01_0208 + 1780275-1781123
          Length = 282

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 249 TTGELESIESGTQRAAVLASFPFTENSGVLSTTVLVCY 136
           T GEL   +  T  + +    P   NS +++ T + CY
Sbjct: 245 TIGELSRADQSTVTSTIRQEIPEASNSSIITITTISCY 282


>06_03_0282 + 19142841-19143344,19144653-19144814,19146308-19146388
          Length = 248

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 390 QLREEVTVESNQILTTQRREPSQVARQRDGTGAEGASQSREKC 518
           QL E    ++      +RRE     R  DG   +G+ Q R KC
Sbjct: 77  QLPEPAAAKTVPATNNKRREEEVADRDGDGDDDDGSPQKRRKC 119


>06_03_0540 -
           21923763-21923945,21924027-21924776,21924895-21925323,
           21925509-21925619,21925715-21926040,21926130-21926251,
           21926905-21927020,21927119-21927243,21927338-21927596
          Length = 806

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 383 RHRQSGAFVGHFSFSSFTVCVRTATVNRYAFSKADANVALE 261
           RHR +  F      S  + CVRT +++  +FS+   N  L+
Sbjct: 193 RHRLTIKFANQARTSKSSACVRTQSISHKSFSRIQKNWLLD 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,847,849
Number of Sequences: 37544
Number of extensions: 435050
Number of successful extensions: 1650
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)