Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30096
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45180.1 68418.m05546 flavin-containing monooxygenase family ...    29   3.6  
At4g04545.1 68417.m00665 Ulp1 protease family protein contains P...    29   3.6  
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom...    29   4.8  
At3g61840.1 68416.m06943 expressed protein                             28   6.3  
At1g29750.2 68414.m03638 leucine-rich repeat transmembrane prote...    28   8.4  
At1g29750.1 68414.m03637 leucine-rich repeat transmembrane prote...    28   8.4  

>At5g45180.1 68418.m05546 flavin-containing monooxygenase family
           protein / FMO family protein low similarity to SP|P31513
           Dimethylaniline monooxygenase [N-oxide forming] 3 (EC
           1.14.13.8) (Hepatic flavin-containing monooxygenase 3)
           (FMO 3) {Homo sapiens}; contains Pfam profile PF00743:
           Flavin-binding monooxygenase-like
          Length = 453

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 495 ASQSREKCACQQPDSRSHWR*PHYWR 572
           A+Q +E   C       HW  PHYWR
Sbjct: 222 ANQGKEGKTCTMVVRTPHWVIPHYWR 247


>At4g04545.1 68417.m00665 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 882

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 312 RGSDAYGKRRKREVTDESTA-LTMPVGQLREEVTVESNQILTTQ 440
           RG DA  KRRK++ + +  A  T P+ +++E+  V S +I  T+
Sbjct: 475 RGDDASQKRRKKKSSSDMDAQSTRPLKRVKEKDQVSSTKIGNTE 518


>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain; non-consensus TG acceptor splice site at
           exon boundary 79262
          Length = 880

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +3

Query: 360 ESTALTMPVGQLREEVTVESNQILTTQRREPSQVARQRDGTGAEGASQSREKCACQQPDS 539
           E+T+L+     + EE++VE  + +  QRR+ S+    +  +  +       KC   +   
Sbjct: 34  EATSLSSGSSDIEEEISVECPKRVANQRRKRSKADEIKTKSSRKRKCDDENKCEENEKKQ 93

Query: 540 RS 545
           RS
Sbjct: 94  RS 95


>At3g61840.1 68416.m06943 expressed protein
          Length = 175

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 184 WERSEDGSALRAAFNAFKFPSSDKYDSNATFASAL 288
           W++  DG A  A   ++ +PS D+ D+  T    L
Sbjct: 127 WKKERDGDAYVAGSGSYIYPSEDEDDTKTTRTKGL 161


>At1g29750.2 68414.m03638 leucine-rich repeat transmembrane protein
           kinase, putative / serine/threonine kinase, putative
           (RKF1) similar to receptor-like serine/threonine kinase
           GI:2465923 from [Arabidopsis thaliana]; identical to
           cDNA receptor-like serine/threonine kinase (RKF1)
           GI:2465922
          Length = 1021

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 285 FGKCVPVNCRGSDAYGKRRK 344
           +  C+ VNC GSD Y K +K
Sbjct: 414 YSSCLHVNCGGSDMYVKEKK 433


>At1g29750.1 68414.m03637 leucine-rich repeat transmembrane protein
           kinase, putative / serine/threonine kinase, putative
           (RKF1) similar to receptor-like serine/threonine kinase
           GI:2465923 from [Arabidopsis thaliana]; identical to
           cDNA receptor-like serine/threonine kinase (RKF1)
           GI:2465922
          Length = 1006

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 285 FGKCVPVNCRGSDAYGKRRK 344
           +  C+ VNC GSD Y K +K
Sbjct: 399 YSSCLHVNCGGSDMYVKEKK 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,762,696
Number of Sequences: 28952
Number of extensions: 309329
Number of successful extensions: 1043
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)