Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30095
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   5.5  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    25   9.7  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   9.7  

>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 93  LIKCVAKRGLICTTVMYYAENYICQRKSGL 182
           L+ C+   G I + V+Y     +C+ K GL
Sbjct: 211 LLNCIISYGRISSAVLYSIVEVVCRAKFGL 240


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 313 LFLRVLFFVYSNSNS*KLKKPYCLYGDELTA 405
           L LR L F YSN+   KLK  Y +Y   L+A
Sbjct: 28  LLLRPLIF-YSNTTMKKLKTEYPIYHRHLSA 57


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 812  LWILTKCWVFRKPFFKVRRGVENNGNTNRYKQIF 711
            LW+  + WV+     ++R G++N  + N   ++F
Sbjct: 926  LWLKERPWVYAHHHVQLRIGLDNEISQNNEAKVF 959


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,326,997
Number of Sequences: 5004
Number of extensions: 68961
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)