Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30095
         (812 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49765| Best HMM Match : EGF (HMM E-Value=0)                         34   0.12 
SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         31   0.84 
SB_57649| Best HMM Match : RPE65 (HMM E-Value=9)                       29   4.5  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     29   5.9  
SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43)             28   7.8  
SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0)                       28   7.8  

>SB_49765| Best HMM Match : EGF (HMM E-Value=0)
          Length = 508

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 551 CRNRQGGGTYPCGLTRGLTTTHC-SIITMVSLGHFCADGLI*CSLRAAGKN 700
           C N Q G  Y C  + G T  HC ++I    +   C++G I C+    GKN
Sbjct: 214 CNNTQDGKNYTCTCSPGYTGRHCDTVIPKACVSSPCSNGSI-CNNTQDGKN 263



 Score = 33.9 bits (74), Expect = 0.16
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 479 VLRSQVPIVTRLPHPSTQNALLLH--CRNRQGGGTYPCGLTRGLTTTHCSIITMVS 640
           +++++ PIV  +P P   +       C N Q G  Y C  + G T  HC+ +  +S
Sbjct: 295 IIQARFPIVLVIPKPCDSSPCSNGSVCNNTQDGKNYTCSCSYGYTGRHCNTLKKLS 350



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 551 CRNRQGGGTYPCGLTRGLTTTHC-SIITMVSLGHFCADGLI*CSLRAAGKN 700
           C N Q G  Y C  + G T  HC ++I        C +G + C+    GKN
Sbjct: 173 CNNTQDGKNYTCTCSPGYTGRHCDTVIPKPCDSSPCNNGSV-CNNTQDGKN 222



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 551 CRNRQGGGTYPCGLTRGLTTTHCSIITMVSL--GHFCADGLI*CSLRAAGKN 700
           C N Q G  Y C  + G T  HC  +  +       C++G + C+    GKN
Sbjct: 131 CNNTQDGKNYTCTCSPGYTGRHCDTVIPLKPCDSSPCSNGGV-CNNTQDGKN 181


>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 551  CRNRQGGGTYPCGLTRGLTTTHCSIITMVSLGHFCADG 664
            C N QGG  + C    G T  HC I     +GH C +G
Sbjct: 963  CINIQGGD-FRCACDEGYTGNHCHIDIDDCIGHECGNG 999


>SB_57649| Best HMM Match : RPE65 (HMM E-Value=9)
          Length = 309

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +2

Query: 521 PSTQNALLLHCRNRQGGGTYPCGLTRGLTTTHCSIITMVSLGHFC------ADGLI*CSL 682
           P+T ++ L H  + Q G  Y  G TRG +  + +I  +  +   C      AD  + CS+
Sbjct: 29  PTTIHSSLAHPHSAQDGTFYNFGATRGPSPKY-NIYMVPPVTKDCSQVEPLADAKVLCSI 87

Query: 683 RAAGKNEPNRKFAYNDLYFHYFQH 754
             A      + FA  + YF + ++
Sbjct: 88  TPANAEVYTQSFAMTENYFIFMEN 111


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 210 YRHYYEKLWVDHFCADIYNFPHNTLQ*CILILFWLHILL 94
           YRHYY + +  H+C   Y   HN +   ++I+  + +++
Sbjct: 50  YRHYYHRCYRHHYCC--YRHRHNFIVIVLVIIIVVIVIV 86


>SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43)
          Length = 360

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +2

Query: 578 YPCGLTRGLTTTHCSIITMVSLGHFCADGLI*CSLRAAGKN 700
           Y C  T G T  HC   T     + CADG   CS+ AA  N
Sbjct: 130 YICSCTPGYTGKHCETDT-----NECADGSHTCSINAACTN 165


>SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1073

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 252 TYYILNNKLQYTYYYRH---YYEKLWVDHFCADIYNFPHNT 139
           TYY L +  Q    Y+H    YEKL  +   AD+YN   NT
Sbjct: 238 TYYSLGDNGQAMLNYKHALCIYEKLGEERKQADVYNKIGNT 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,144,275
Number of Sequences: 59808
Number of extensions: 505097
Number of successful extensions: 1201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)