Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30095
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    28   6.9  
AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine re...    28   6.9  
U88173-7|AAK21383.2|  361|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
           protein R09H10.5 protein.
          Length = 1603

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 512 LPHPSTQNALLLHCRNRQGGGTYPCGLTRGLTTTHCSIITMVS 640
           LP+ S  N  ++ CRN   G +  C    GL + HC   T V+
Sbjct: 156 LPYYSGANCEVVTCRNNGIGSSGRCSCPPGLYSAHCEARTCVT 198


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -3

Query: 327 YAQK*CFQSHLLSIAETRDTPVLHQTYYILNNKLQYTYYYRHY 199
           Y  +  F  H++ + +   TP++ Q  Y+ NNK      ++++
Sbjct: 268 YDSEQAFVFHIIMVTDVMSTPLIVQISYLCNNKRNIRTLFKNF 310


>AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform b protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -3

Query: 327 YAQK*CFQSHLLSIAETRDTPVLHQTYYILNNKLQYTYYYRHY 199
           Y  +  F  H++ + +   TP++ Q  Y+ NNK      ++++
Sbjct: 250 YDSEQAFVFHIIMVTDVMSTPLIVQISYLCNNKRNIRTLFKNF 292


>U88173-7|AAK21383.2|  361|Caenorhabditis elegans Hypothetical
           protein F46F11.6 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 500 IVTRLPHPSTQNALLLHCRNRQGGGTYP 583
           I+TRLP P  QN +L+   N Q   T P
Sbjct: 27  ILTRLPFPDKQNMMLVSWENSQICSTLP 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,288,852
Number of Sequences: 27780
Number of extensions: 388852
Number of successful extensions: 946
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)