Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30094
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    45   3e-06
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    33   0.006
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    28   0.31 
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    27   0.72 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   1.2  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   2.2  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    24   3.8  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    24   5.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    23   6.7  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    23   6.7  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    23   6.7  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    23   8.8  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 44.8 bits (101), Expect = 3e-06
 Identities = 19/42 (45%), Positives = 28/42 (66%)
 Frame = +3

Query: 3   CWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           C   I   EG  +FFKGA +N+LRG  GA VL +YD+++ ++
Sbjct: 276 CGRQILAKEGARSFFKGAGANILRGVAGAGVLSIYDQVQLLM 317


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 33.5 bits (73), Expect = 0.006
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 12  TIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEI 116
           T+A+ EG +A +KG    VLR G GG  +LV+++ +
Sbjct: 249 TVAREEGFTALYKGFVPKVLRLGPGGGILLVVFNSV 284


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 0.31
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  IAKTEGTSAFFKGAFSNVLRGTG-GAFVLVLYDEIKKV 125
           IAK EG   FF G  + +LR      F L+ Y+++++V
Sbjct: 165 IAKQEGMKTFFYGYRATILRDIPFSGFQLLFYEKLRQV 202


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 0.72
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 15  IAKTEGTSAFFKGAFSNVLR 74
           I KTEG + FF+G  SN+L+
Sbjct: 276 IYKTEGINGFFRGYSSNMLK 295


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 103  KTSTKAPPVPLRTLEKAPL 47
            K S+KAPPVPL + +  P+
Sbjct: 1016 KLSSKAPPVPLPSADAPPI 1034


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 286 FFFFFLWNHCIHF 248
           FFFFF ++HC  F
Sbjct: 79  FFFFFFFSHCRRF 91


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 12  TIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDE 113
           TIAK EG +   + A +N L+    AFV V ++E
Sbjct: 875 TIAKEEGMAKAREEAIANPLKYAIDAFVAVDHEE 908


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -3

Query: 145 FLR*IYRTFLISSYKTSTKAPPVPLRTLEKAPLKKAEVPSV 23
           F   +Y  F+I   K   K  P P      AP  + + PSV
Sbjct: 307 FFNLLYEKFVIGKTKEPAKPVPQPSSNEPPAPSAENKQPSV 347


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 158 FLCDSVSQPLPSNHVLLDTKTTLVTYF*LNKVYTM 262
           F+     QP+PSN   L  +T L+ +    KVY +
Sbjct: 646 FISSDTFQPIPSNQEFL--RTGLLGFIRKGKVYVL 678


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 15  IAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           I K EG +AF++G F ++           LY+  K  L
Sbjct: 240 IYKYEGLAAFYRGLFPSLFGTLHVGIQFPLYEYFKSFL 277


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 103 KTSTKAPPVPLRTLEKAPLKKAEVPSVLAMVAQ 5
           +T +   PVP+   E+ P  +  +PS +   +Q
Sbjct: 283 RTKSVETPVPMEAAEEEPATEYSIPSSVTFNSQ 315


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 170 SVSQPLPSNHVLLDTKT--TLVTYF 238
           S SQ  PSNHVL  + T   LVT F
Sbjct: 465 SNSQQAPSNHVLSKSNTVPNLVTGF 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 856,582
Number of Sequences: 5004
Number of extensions: 12690
Number of successful extensions: 47
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)