Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30094
(288 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019... 58 2e-09
02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309 38 0.001
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887 37 0.002
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 34 0.021
06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627 31 0.15
03_01_0644 - 4719954-4720022,4720445-4720912,4721009-4721312,472... 27 1.8
02_01_0218 + 1433310-1435620,1435672-1435951,1436461-1436524,143... 27 1.8
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717 26 4.2
01_07_0386 + 43218686-43218745,43218972-43219190,43219307-432193... 26 5.6
12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397... 25 7.4
12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629... 25 7.4
10_08_0185 + 15578607-15578845,15580422-15580536,15580656-155807... 25 7.4
>05_06_0233 +
26599068-26599466,26601214-26601829,26601871-26601917,
26602101-26602268
Length = 409
Score = 57.6 bits (133), Expect = 2e-09
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = +3
Query: 3 CWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
CW I K EG +F++GA SN+ R TG A +LVLYDE+KK +
Sbjct: 295 CWRKIYKVEGIKSFYRGALSNMFRSTGAAAILVLYDEVKKFM 336
>02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309
Length = 382
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 6 WATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIK 119
++ I K EG + FKGA +N+LR GA VL YD+++
Sbjct: 332 FSQILKNEGAKSLFKGAGANILRAIAGAGVLSGYDQLQ 369
>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
Length = 380
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +3
Query: 15 IAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
I EG + FKGA +N+LR GA VL YD+++ V+
Sbjct: 333 IVAKEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVVV 370
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 33.9 bits (74), Expect = 0.021
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 15 IAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKK 122
I TEG F+G +N+L G GA VL YD++ +
Sbjct: 276 IVSTEGFFTLFRGVGANILSGMAGAGVLAGYDQLHR 311
>06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627
Length = 419
Score = 31.1 bits (67), Expect = 0.15
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 12 TIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKVL 128
+I KTEG + F+G F NV+R A L +D KK L
Sbjct: 179 SIMKTEGWTGLFRGNFVNVIRVAPSKAIELFAFDTAKKFL 218
>03_01_0644 -
4719954-4720022,4720445-4720912,4721009-4721312,
4722321-4722745
Length = 421
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 15 IAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKVL 128
IA T+G F+KG F N+LR A YD +K L
Sbjct: 171 IATTQGLKGFWKGNFVNILRTAPFKAVNFYAYDTYRKQL 209
>02_01_0218 +
1433310-1435620,1435672-1435951,1436461-1436524,
1436557-1436562
Length = 886
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 118 LISSYKTSTKAPPVPLRTLEKAPLKKAEVPSVLAMVA 8
L +++ ST+APP PL L ++A+ + L VA
Sbjct: 22 LSNTFSASTRAPPPPLPPLSPLLPRRADAATALTPVA 58
>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
Length = 415
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 12 TIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKVL 128
+I K EG + F+G F NV+R A L +D K L
Sbjct: 177 SIMKHEGWTGLFRGNFVNVIRVAPSKAIELFAFDTANKFL 216
>01_07_0386 +
43218686-43218745,43218972-43219190,43219307-43219391,
43219583-43219713,43219802-43219900,43219984-43220088,
43220190-43220264,43222006-43222092,43222129-43222173
Length = 301
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 3 CWATIAKTEGTSAFFKGAFSNVLR 74
C+A K +G AF+KG +N R
Sbjct: 250 CFAKTLKNDGLPAFYKGFIANFCR 273
>12_02_0912 -
24238659-24238897,24239353-24239462,24239548-24239741,
24239839-24239907,24240096-24240282,24240683-24240969,
24241593-24241880
Length = 457
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 103 KTSTKAPPVPLRTLEKAPLKKAEVPSVLAMVAQ 5
+T PP L+ PL+++ P +L VAQ
Sbjct: 240 RTRRVYPPCDTSALQMLPLERSTTPPILISVAQ 272
>12_02_0618 -
21262021-21262117,21262429-21262466,21262933-21262986,
21263274-21263438,21263523-21263759,21263857-21263918,
21264543-21264656,21264816-21264942,21266200-21266218,
21266338-21266428,21266932-21267094,21267182-21267330,
21268147-21268287,21268368-21268533,21268568-21268631,
21268729-21269084,21269759-21269977,21270328-21270433,
21270713-21270942
Length = 865
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 3 CWATIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKV 125
C + TEG ++ +KG F+ R G A V+ ++++++
Sbjct: 818 CGYQVVVTEGVTSLYKGGFATFARLGPQTAITFVVCEKLREL 859
>10_08_0185 +
15578607-15578845,15580422-15580536,15580656-15580745,
15581935-15582033,15582154-15582258
Length = 215
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -3
Query: 121 FLISSYKT-STKAPPVPLRTLEKAPLKKAEV 32
FL+S+Y+ + PP+PL +L+ +PL ++
Sbjct: 16 FLLSAYQEYALLLPPLPLPSLKNSPLANPDL 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,412,309
Number of Sequences: 37544
Number of extensions: 77142
Number of successful extensions: 162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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