Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30094
         (288 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    79   1e-17
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    79   1e-17
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   0.75 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   0.99 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   3.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   4.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    20   7.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    20   7.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   7.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 78.6 bits (185), Expect = 1e-17
 Identities = 35/42 (83%), Positives = 38/42 (90%)
 Frame = +3

Query: 3   CWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           CWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 259 CWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 78.6 bits (185), Expect = 1e-17
 Identities = 35/42 (83%), Positives = 38/42 (90%)
 Frame = +3

Query: 3   CWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           CWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 259 CWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 0.75
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 184 TPLKSCIIRHENDFSNLFLVK*SVYNDSIKKKKK 285
           T  +S + RH  D   L ++K   +  SIK   K
Sbjct: 638 TLTESLLNRHNEDMEKLMMLKHREFRSSIKASDK 671


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 0.99
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 118 LISSYKTSTKAPPVPLRTLEKAPL 47
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 189 GSGCDTESHRNYGNNSYVRF 130
           GS  D+++  N+G  S VRF
Sbjct: 587 GSTTDSQTEDNFGPLSNVRF 606


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 168 SHRNYGNNSYVRFTGP 121
           ++  YG N+ +R+ GP
Sbjct: 418 AYNTYGRNAGLRYRGP 433


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 139 R*IYRTFLISSYKTS 95
           R I R FLIS  KTS
Sbjct: 75  RYIIRMFLISQQKTS 89


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 139 R*IYRTFLISSYKTS 95
           R I R FLIS  KTS
Sbjct: 58  RYIIRMFLISQQKTS 72


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 141 KNCYHNFYVIPCR 179
           +N YH F ++P R
Sbjct: 299 QNSYHEFQILPER 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,388
Number of Sequences: 438
Number of extensions: 871
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)