Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30094
         (288 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56450.1 68418.m07046 mitochondrial substrate carrier family ...    55   7e-09
At4g28390.1 68417.m04063 ADP, ATP carrier protein, mitochondrial...    40   3e-04
At5g13490.1 68418.m01556 ADP, ATP carrier protein 2, mitochondri...    40   4e-04
At3g08580.2 68416.m00996 ADP, ATP carrier protein 1, mitochondri...    38   8e-04
At3g08580.1 68416.m00995 ADP, ATP carrier protein 1, mitochondri...    38   8e-04
At5g58970.1 68418.m07387 uncoupling protein (UCP2) identical to ...    36   0.006
At5g17400.1 68418.m02041 ADP, ATP carrier protein, mitochondrial...    35   0.010
At5g66380.1 68418.m08370 mitochondrial substrate carrier family ...    31   0.097
At1g34065.1 68414.m04223 mitochondrial substrate carrier family ...    30   0.30 
At5g58970.2 68418.m07388 uncoupling protein (UCP2) identical to ...    27   2.1  
At5g09470.1 68418.m01096 mitochondrial substrate carrier family ...    27   2.8  
At1g78180.1 68414.m09110 mitochondrial substrate carrier family ...    26   3.7  
At4g18150.1 68417.m02697 hypothetical protein                          25   6.4  
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar...    25   8.4  

>At5g56450.1 68418.m07046 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 330

 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 21/42 (50%), Positives = 31/42 (73%)
 Frame = +3

Query: 3   CWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           CW  I ++EG ++F++GA SN+ R TG A +LV YDE+K+ L
Sbjct: 284 CWKKIYRSEGLASFYRGALSNMFRSTGSAAILVFYDEVKRFL 325


>At4g28390.1 68417.m04063 ADP, ATP carrier protein, mitochondrial,
           putative / ADP/ATP translocase, putative / adenine
           nucleotide translocator, putative similar to
           mitochondrial ADP,ATP carrier protein SP:P12857 from
           [Zea mays]
          Length = 379

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +3

Query: 6   WATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           ++ I K EG  + FKGA +N+LR   GA VL  YD+++ ++
Sbjct: 329 FSQIVKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQLIV 369


>At5g13490.1 68418.m01556 ADP, ATP carrier protein 2, mitochondrial
           / ADP/ATP translocase 2 / adenine nucleotide
           translocator 2 (ANT2) identical to SWISS-PROT:P40941
           ADP,ATP carrier protein 2, mitochondrial precursor
           (Adenine nucleotide translocator 2) [Arabidopsis
           thaliana]
          Length = 385

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +3

Query: 6   WATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           ++ I K EG  + FKGA +N+LR   GA VL  YD+++ ++
Sbjct: 335 FSQIVKKEGAKSLFKGAGANILRAVAGAGVLAGYDKLQLIV 375


>At3g08580.2 68416.m00996 ADP, ATP carrier protein 1, mitochondrial
           / ADP/ATP translocase 1 / adenine nucleotide
           translocator 1 (ANT1) identical to SWISS-PROT:P31167
           ADP,ATP carrier protein 1 (Adenine nucleotide
           translocator 1) [Arabidopsis thaliana]
          Length = 381

 Score = 38.3 bits (85), Expect = 8e-04
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +3

Query: 15  IAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           I K EG  + FKGA +N+LR   GA VL  YD+++ ++
Sbjct: 334 ILKNEGAKSLFKGAGANILRAVAGAGVLSGYDKLQLIV 371


>At3g08580.1 68416.m00995 ADP, ATP carrier protein 1, mitochondrial
           / ADP/ATP translocase 1 / adenine nucleotide
           translocator 1 (ANT1) identical to SWISS-PROT:P31167
           ADP,ATP carrier protein 1 (Adenine nucleotide
           translocator 1) [Arabidopsis thaliana]
          Length = 381

 Score = 38.3 bits (85), Expect = 8e-04
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +3

Query: 15  IAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           I K EG  + FKGA +N+LR   GA VL  YD+++ ++
Sbjct: 334 ILKNEGAKSLFKGAGANILRAVAGAGVLSGYDKLQLIV 371


>At5g58970.1 68418.m07387 uncoupling protein (UCP2) identical to
           uncoupling protein GI:4063007 from [Arabidopsis
           thaliana]
          Length = 305

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 3   CWATIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKV 125
           C+    KTEG  AF+KG   N  R GT  A + +  +++KKV
Sbjct: 256 CFIKTMKTEGIMAFYKGFLPNFTRLGTWNAIMFLTLEQVKKV 297



 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 9   ATIAKTEGTSAFFKGAFSNVLRG-TGGAFVLVLYDEIKKVL 128
           ATIA+ EG S  +KG  + + R    G   + LY+ +K +L
Sbjct: 65  ATIAREEGISGLWKGVIAGLHRQCIYGGLRIGLYEPVKTLL 105


>At5g17400.1 68418.m02041 ADP, ATP carrier protein, mitochondrial,
           putative / ADP/ATP translocase, putative / adenine
           nucleotide translocator, putative similar to
           SWISS-PROT:Q09188 ADP,ATP carrier protein (ADP/ATP
           translocase) [Schizosaccharomyces pombe]; contains Pfam
           profile: PF00153 mitochondrial carrier protein
          Length = 306

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +3

Query: 15  IAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKV 125
           I K+EG  A ++G  +N+L G  GA VL  YD++ ++
Sbjct: 263 ILKSEGFYALYRGVTANMLLGVAGAGVLAGYDQLHQI 299


>At5g66380.1 68418.m08370 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 308

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 12  TIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 128
           TI K EG  A +KG    ++  + GA     Y+E++K++
Sbjct: 155 TIVKEEGPRALYKGIVPGLVLVSHGAIQFTAYEELRKII 193


>At1g34065.1 68414.m04223 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 327

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 3   CWATIAKTEGTSAFFKGAFSNVL-RGTGGAFVLVLYDEIKKVL 128
           C  TI + EG+SA +KG    VL  G GG+    + ++ K++L
Sbjct: 275 CIKTIIREEGSSALWKGMGPRVLWIGIGGSIFFGVLEKTKQIL 317


>At5g58970.2 68418.m07388 uncoupling protein (UCP2) identical to
           uncoupling protein GI:4063007 from [Arabidopsis
           thaliana]
          Length = 272

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 9   ATIAKTEGTSAFFKGAFSNVLRG-TGGAFVLVLYDEIKKVL 128
           ATIA+ EG S  +KG  + + R    G   + LY+ +K +L
Sbjct: 65  ATIAREEGISGLWKGVIAGLHRQCIYGGLRIGLYEPVKTLL 105


>At5g09470.1 68418.m01096 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 337

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 9   ATIAKTEGTSAFFKGAFSNVLRG-TGGAFVLVLYDEIKK 122
           A I KTEG +A F G  + +LR     A  + +YD +K+
Sbjct: 97  AHIVKTEGPAALFSGVSATILRQMLYSATRMGIYDFLKR 135


>At1g78180.1 68414.m09110 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 342

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 12  TIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKVL 128
           +IA T+G + F+KG   NVLR     A     YD  +K L
Sbjct: 91  SIATTQGLTGFWKGNLLNVLRTAPFKAVNFCAYDTYRKQL 130


>At4g18150.1 68417.m02697 hypothetical protein 
          Length = 762

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 118 LISSYKTSTKAPPVP 74
           ++  YKT T APPVP
Sbjct: 601 MLMQYKTQTTAPPVP 615


>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to
           gb|U06698 neuronal kinesin heavy chain from Homo sapiens
           and contains a PF|00225 Kinesin motor domain. EST
           gb|AA042507 comes from this gene; identical to cDNA
           MKRP1 mRNA for kinesin-related protein,  GI:16902291,
           kinesin-related protein [Arabidopsis thaliana]
           GI:16902292
          Length = 890

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 109 SYKTSTKAPPVPLRTLEKAPLKKAEVPS 26
           S ++ST +P  P R+    P+K+ E PS
Sbjct: 6   SQRSSTISPARPRRSPATIPMKRPETPS 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,423,693
Number of Sequences: 28952
Number of extensions: 65165
Number of successful extensions: 142
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)